Variant report

Variant	rs58354485
Chromosome Location	chr7:121841059-121841060
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10275722	1.00[AMR][1000 genomes]
rs17144052	1.00[AMR][1000 genomes]
rs56106937	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57428996	1.00[AMR][1000 genomes]
rs60845025	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6466812	1.00[AMR][1000 genomes]
rs6945603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6947355	1.00[AMR][1000 genomes]
rs6956111	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6967194	1.00[AMR][1000 genomes]
rs6975854	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717620	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717621	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717622	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717625	0.87[AFR][1000 genomes]
rs73717781	1.00[AMR][1000 genomes]
rs73717782	1.00[AMR][1000 genomes]
rs73717784	1.00[AMR][1000 genomes]
rs73717785	1.00[AMR][1000 genomes]
rs73717786	1.00[AMR][1000 genomes]
rs73717787	1.00[AMR][1000 genomes]
rs73717789	1.00[AMR][1000 genomes]
rs73717790	1.00[AMR][1000 genomes]
rs73717791	1.00[AMR][1000 genomes]
rs73717792	1.00[AMR][1000 genomes]
rs73717793	1.00[AMR][1000 genomes]
rs73717794	1.00[AMR][1000 genomes]
rs73717795	1.00[AMR][1000 genomes]
rs73717797	1.00[AMR][1000 genomes]
rs73717800	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721104	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721105	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721107	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721111	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7790099	1.00[AMR][1000 genomes]
rs7794017	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7809130	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427803	chr7:121701581-121876302	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1034624	chr7:121813180-121899703	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1034797	chr7:121815255-121897109	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1028221	chr7:121818974-121899162	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1024868	chr7:121818974-121899703	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121839600-121845800	Weak transcription	Fetal Heart	heart
2	chr7:121840800-121841200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr7:121841000-121841200	Enhancers	HUES48 Cell Line	embryonic stem cell

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