Variant report

Variant	rs73717621
Chromosome Location	chr7:121895786-121895787
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10275722	1.00[AMR][1000 genomes]
rs17144052	1.00[AMR][1000 genomes]
rs56106937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57428996	1.00[AMR][1000 genomes]
rs58354485	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60845025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6466812	1.00[AMR][1000 genomes]
rs6945603	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6947355	1.00[AMR][1000 genomes]
rs6956111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6967194	1.00[AMR][1000 genomes]
rs6975854	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717625	0.91[AFR][1000 genomes]
rs73717781	1.00[AMR][1000 genomes]
rs73717782	1.00[AMR][1000 genomes]
rs73717784	1.00[AMR][1000 genomes]
rs73717785	1.00[AMR][1000 genomes]
rs73717786	1.00[AMR][1000 genomes]
rs73717787	1.00[AMR][1000 genomes]
rs73717789	1.00[AMR][1000 genomes]
rs73717790	1.00[AMR][1000 genomes]
rs73717791	1.00[AMR][1000 genomes]
rs73717792	1.00[AMR][1000 genomes]
rs73717793	1.00[AMR][1000 genomes]
rs73717794	1.00[AMR][1000 genomes]
rs73717795	1.00[AMR][1000 genomes]
rs73717797	1.00[AMR][1000 genomes]
rs73717800	1.00[AMR][1000 genomes]
rs73721104	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721105	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721107	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7790099	1.00[AMR][1000 genomes]
rs7794017	1.00[AMR][1000 genomes]
rs7809130	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034624	chr7:121813180-121899703	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1034797	chr7:121815255-121897109	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1028221	chr7:121818974-121899162	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1024868	chr7:121818974-121899703	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1024364	chr7:121843701-121916791	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1020645	chr7:121843701-121929598	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1034945	chr7:121843701-121933166	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121894800-121896400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr7:121894800-121896800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr7:121895000-121896000	Enhancers	H9 Cell Line	embryonic stem cell
4	chr7:121895000-121896400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr7:121895200-121896000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:121895200-121896400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr7:121895200-121896600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr7:121895200-121896800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:121895400-121896000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:121895400-121896000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr7:121895400-121896200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr7:121895600-121895800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr7:121895600-121900400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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