Variant report

Variant	rs73721107
Chromosome Location	chr7:121814256-121814257
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10275722	1.00[AMR][1000 genomes]
rs17144052	1.00[AMR][1000 genomes]
rs56106937	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57428996	1.00[AMR][1000 genomes]
rs58354485	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60845025	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6466812	1.00[AMR][1000 genomes]
rs6945603	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6947355	1.00[AMR][1000 genomes]
rs6956111	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6967194	1.00[AMR][1000 genomes]
rs6975854	1.00[AMR][1000 genomes]
rs73717620	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717621	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717622	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717781	1.00[AMR][1000 genomes]
rs73717782	1.00[AMR][1000 genomes]
rs73717784	1.00[AMR][1000 genomes]
rs73717785	1.00[AMR][1000 genomes]
rs73717786	1.00[AMR][1000 genomes]
rs73717787	1.00[AMR][1000 genomes]
rs73717789	1.00[AMR][1000 genomes]
rs73717790	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717791	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717792	1.00[AMR][1000 genomes]
rs73717793	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717794	1.00[AMR][1000 genomes]
rs73717795	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717797	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717800	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721111	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7790099	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7794017	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7809130	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427803	chr7:121701581-121876302	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016617	chr7:121770441-121820730	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1034624	chr7:121813180-121899703	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121810200-121825800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links