Variant report

Variant	rs73721104
Chromosome Location	chr7:121808028-121808029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:121798168..121800112-chr7:121805827..121808300,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226636	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10275722	1.00[AMR][1000 genomes]
rs17144052	1.00[AMR][1000 genomes]
rs56106937	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57428996	1.00[AMR][1000 genomes]
rs58354485	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60845025	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6466812	1.00[AMR][1000 genomes]
rs6945603	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6947355	1.00[AMR][1000 genomes]
rs6956111	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6967194	1.00[AMR][1000 genomes]
rs6975854	1.00[AMR][1000 genomes]
rs73717620	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717621	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717622	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717781	1.00[AMR][1000 genomes]
rs73717782	1.00[AMR][1000 genomes]
rs73717784	1.00[AMR][1000 genomes]
rs73717785	1.00[AMR][1000 genomes]
rs73717786	1.00[AMR][1000 genomes]
rs73717787	1.00[AMR][1000 genomes]
rs73717789	1.00[AMR][1000 genomes]
rs73717790	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717791	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717792	1.00[AMR][1000 genomes]
rs73717793	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717794	1.00[AMR][1000 genomes]
rs73717795	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717797	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717800	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721111	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7790099	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7794017	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7809130	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427803	chr7:121701581-121876302	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016617	chr7:121770441-121820730	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121797800-121811800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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