Variant report

Variant	rs73717792
Chromosome Location	chr7:121796120-121796121
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10275722	1.00[AMR][1000 genomes]
rs17144052	1.00[AMR][1000 genomes]
rs56106937	1.00[AMR][1000 genomes]
rs57428996	1.00[AMR][1000 genomes]
rs58354485	1.00[AMR][1000 genomes]
rs60845025	1.00[AMR][1000 genomes]
rs6466812	1.00[AMR][1000 genomes]
rs6945603	1.00[AMR][1000 genomes]
rs6947355	1.00[AMR][1000 genomes]
rs6956111	1.00[AMR][1000 genomes]
rs6967194	1.00[AMR][1000 genomes]
rs6975854	1.00[AMR][1000 genomes]
rs73717620	1.00[AMR][1000 genomes]
rs73717621	1.00[AMR][1000 genomes]
rs73717622	1.00[AMR][1000 genomes]
rs73717781	1.00[AMR][1000 genomes]
rs73717782	1.00[AMR][1000 genomes]
rs73717784	1.00[AMR][1000 genomes]
rs73717785	1.00[AMR][1000 genomes]
rs73717786	1.00[AMR][1000 genomes]
rs73717787	1.00[AMR][1000 genomes]
rs73717789	1.00[AMR][1000 genomes]
rs73717790	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717791	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717793	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717794	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717795	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717797	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717800	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721104	1.00[AMR][1000 genomes]
rs73721105	1.00[AMR][1000 genomes]
rs73721107	1.00[AMR][1000 genomes]
rs73721111	1.00[AMR][1000 genomes]
rs7790099	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7794017	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7809130	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427803	chr7:121701581-121876302	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1019004	chr7:121733372-121800380	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1034553	chr7:121734934-121800380	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv523632	chr7:121754695-121802068	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1016617	chr7:121770441-121820730	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121785000-121796800	Weak transcription	Ovary	ovary
2	chr7:121785800-121799600	Weak transcription	Left Ventricle	heart
3	chr7:121785800-121806400	Weak transcription	Pancreas	Pancrea
4	chr7:121791800-121796800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr7:121793600-121796400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:121795400-121797000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr7:121795400-121797000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr7:121795400-121797800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr7:121795600-121796400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr7:121795600-121797600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr7:121795800-121796200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:121795800-121796200	Enhancers	Fetal Heart	heart
13	chr7:121795800-121796600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr7:121795800-121796800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:121796000-121796400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr7:121796000-121796800	Enhancers	Stomach Mucosa	stomach

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