Variant report

Variant	rs58506417
Chromosome Location	chr21:37909238-37909239
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10483034	1.00[AMR][1000 genomes]
rs55864938	1.00[AMR][1000 genomes]
rs60763484	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6517360	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73902567	1.00[AMR][1000 genomes]
rs73902568	1.00[AMR][1000 genomes]
rs73902571	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902572	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902574	1.00[AMR][1000 genomes]
rs73902576	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902601	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834090	chr21:37812545-38009542	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1064290	chr21:37878964-37983133	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:37897000-37911600	Weak transcription	Pancreas	Pancrea
2	chr21:37908000-37911800	Weak transcription	Gastric	stomach
3	chr21:37908400-37911600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr21:37908400-37911800	Weak transcription	Fetal Kidney	kidney
5	chr21:37908600-37909400	Enhancers	Placenta	Placenta
6	chr21:37908800-37910400	Enhancers	GM12878-XiMat	blood
7	chr21:37908800-37911000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links