Variant report

Variant	rs73902571
Chromosome Location	chr21:37914860-37914861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10483034	1.00[AMR][1000 genomes]
rs55864938	1.00[AMR][1000 genomes]
rs58506417	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60763484	1.00[AMR][1000 genomes]
rs6517360	0.83[AMR][1000 genomes]
rs73902567	1.00[AMR][1000 genomes]
rs73902568	1.00[AMR][1000 genomes]
rs73902572	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902574	1.00[AMR][1000 genomes]
rs73902576	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834090	chr21:37812545-38009542	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1064290	chr21:37878964-37983133	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:37912400-37916400	Weak transcription	Pancreas	Pancrea
2	chr21:37914200-37915200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr21:37914400-37915600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr21:37914600-37915000	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
5	chr21:37914600-37915000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
6	chr21:37914600-37915000	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
7	chr21:37914600-37915200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr21:37914600-37915200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr21:37914600-37915200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr21:37914600-37915200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
11	chr21:37914600-37915200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
12	chr21:37914600-37915200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr21:37914600-37915200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr21:37914600-37915200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr21:37914600-37915600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr21:37914600-37915600	Flanking Active TSS	GM12878-XiMat	blood
17	chr21:37914800-37915000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
18	chr21:37914800-37915000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
19	chr21:37914800-37915000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
20	chr21:37914800-37915000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr21:37914800-37915000	Bivalent Enhancer	Esophagus	oesophagus
22	chr21:37914800-37915000	Bivalent Enhancer	Fetal Lung	lung
23	chr21:37914800-37915000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
24	chr21:37914800-37915000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
25	chr21:37914800-37915000	Bivalent Enhancer	Fetal Thymus	thymus
26	chr21:37914800-37915000	Bivalent Enhancer	Thymus	Thymus
27	chr21:37914800-37915200	Active TSS	iPS-15b Cell Line	embryonic stem cell
28	chr21:37914800-37915200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
29	chr21:37914800-37915200	Enhancers	Primary hematopoietic stem cells	blood
30	chr21:37914800-37915200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
31	chr21:37914800-37915200	Flanking Bivalent TSS/Enh	Placenta	Placenta
32	chr21:37914800-37915200	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
33	chr21:37914800-37915400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr21:37914800-37915400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

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