Variant report

Variant	rs73902576
Chromosome Location	chr21:37922133-37922134
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10483034	1.00[AMR][1000 genomes]
rs55864938	1.00[AMR][1000 genomes]
rs58506417	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60763484	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6517360	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73902567	1.00[AMR][1000 genomes]
rs73902568	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902571	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902572	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902574	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834090	chr21:37812545-38009542	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1064290	chr21:37878964-37983133	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:37915800-37924800	Weak transcription	Right Atrium	heart
2	chr21:37919600-37922800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr21:37920200-37923400	Weak transcription	Fetal Lung	lung
4	chr21:37920200-37923800	Weak transcription	Ovary	ovary
5	chr21:37920400-37922800	Weak transcription	Liver	Liver
6	chr21:37920600-37922400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr21:37920600-37923400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr21:37921600-37922400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr21:37921600-37922800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr21:37921800-37922200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr21:37921800-37922800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr21:37921800-37923000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr21:37921800-37923800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
14	chr21:37921800-37924000	Enhancers	H1 Cell Line	embryonic stem cell
15	chr21:37922000-37922400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr21:37922000-37922600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr21:37922000-37922800	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr21:37922000-37928800	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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