Variant report

Variant	rs6517360
Chromosome Location	chr21:37899211-37899212
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10483034	0.83[AMR][1000 genomes]
rs55864938	0.83[AMR][1000 genomes]
rs58506417	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60763484	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73902567	0.83[AMR][1000 genomes]
rs73902568	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73902571	0.83[AMR][1000 genomes]
rs73902572	0.83[AMR][1000 genomes]
rs73902574	0.83[AMR][1000 genomes]
rs73902576	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834090	chr21:37812545-38009542	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1064290	chr21:37878964-37983133	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:37895800-37902600	Weak transcription	GM12878-XiMat	blood
2	chr21:37897000-37911600	Weak transcription	Pancreas	Pancrea
3	chr21:37897600-37902200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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