Variant report

Variant	rs73902572
Chromosome Location	chr21:37916154-37916155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10483034	1.00[AMR][1000 genomes]
rs55864938	1.00[AMR][1000 genomes]
rs58506417	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60763484	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6517360	0.83[AMR][1000 genomes]
rs7283441	0.81[AFR][1000 genomes]
rs73902567	1.00[AMR][1000 genomes]
rs73902568	1.00[AMR][1000 genomes]
rs73902571	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902574	1.00[AMR][1000 genomes]
rs73902576	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902601	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834090	chr21:37812545-38009542	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1064290	chr21:37878964-37983133	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:37912400-37916400	Weak transcription	Pancreas	Pancrea
2	chr21:37915200-37921600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr21:37915600-37916200	Enhancers	GM12878-XiMat	blood
4	chr21:37915600-37919800	Enhancers	Liver	Liver
5	chr21:37915600-37921600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr21:37915800-37922000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr21:37915800-37924800	Weak transcription	Right Atrium	heart
8	chr21:37916000-37916600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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