Variant report

Variant	rs58548626
Chromosome Location	chr6:69418709-69418710
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:69403827..69406066-chr6:69418445..69421637,3	K562	blood:
2	chr6:69417656..69421802-chr6:69423180..69427758,4	K562	blood:
3	chr6:69417656..69419541-chr6:69421523..69424680,3	K562	blood:
4	chr6:69349314..69351973-chr6:69416825..69419613,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs56075259	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56399771	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59009249	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59384052	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60607705	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60761802	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60923857	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461967	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73461968	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73461970	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73461971	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73461975	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73461977	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73461979	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73461996	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462002	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73463903	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73463905	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73463911	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73463915	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73463917	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73463925	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73463928	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73463932	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463934	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463935	1.00[AMR][1000 genomes]
rs73463946	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463952	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467839	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467848	0.92[AFR][1000 genomes]
rs73745828	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69406000-69419600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:69414400-69419800	Weak transcription	Fetal Lung	lung
3	chr6:69414600-69418800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:69414600-69419000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr6:69415400-69418800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:69415800-69419000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:69417600-69419800	Enhancers	Brain Anterior Caudate	brain
8	chr6:69417600-69421800	Enhancers	Brain Angular Gyrus	brain
9	chr6:69417600-69422400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr6:69417800-69421200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:69418000-69419000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:69418400-69418800	Weak transcription	Brain Substantia Nigra	brain
13	chr6:69418400-69419000	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr6:69418600-69419800	Enhancers	Brain Hippocampus Middle	brain
15	chr6:69418600-69420200	Enhancers	HUES48 Cell Line	embryonic stem cell

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