Variant report

Variant	rs73461996
Chromosome Location	chr6:69416060-69416061
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69415960..69417557-chr6:69419108..69420686,2	K562	blood:
2	chr6:69403489..69405402-chr6:69413851..69416592,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs56075259	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56399771	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58548626	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59009249	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59384052	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60607705	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60761802	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60923857	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73461968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73461970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73461971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73461975	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73461977	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73461979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73463903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73463905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73463911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73463915	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73463917	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73463925	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73463928	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73463932	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463934	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463935	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463946	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463952	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467839	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467848	0.94[AFR][1000 genomes]
rs73745828	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1015906	chr6:69376236-69416331	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69406000-69417800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:69406000-69419600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:69407600-69417600	Weak transcription	Brain Hippocampus Middle	brain
4	chr6:69407600-69417800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:69411800-69417600	Weak transcription	Brain Angular Gyrus	brain
6	chr6:69412200-69418200	Weak transcription	Brain Substantia Nigra	brain
7	chr6:69414400-69419800	Weak transcription	Fetal Lung	lung
8	chr6:69414600-69418800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:69414600-69419000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr6:69414800-69417600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:69414800-69417600	Weak transcription	Brain Anterior Caudate	brain
12	chr6:69415400-69418800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr6:69415600-69418600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:69415800-69419000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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