Variant report

Variant	rs73461975
Chromosome Location	chr6:69391481-69391482
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs56075259	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56399771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58548626	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59009249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59384052	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60607705	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60761802	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60923857	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461967	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73461968	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73461970	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73461971	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73461977	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73461979	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73461996	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73462002	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73463903	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73463905	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73463911	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73463915	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73463917	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73463925	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73463928	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73463932	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463934	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463935	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463946	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463952	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467839	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467848	0.94[AFR][1000 genomes]
rs73745828	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1015906	chr6:69376236-69416331	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69352200-69399000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:69364200-69399800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:69379200-69396200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:69379200-69398800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:69383200-69400000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:69383600-69396000	Weak transcription	Brain Substantia Nigra	brain
7	chr6:69388400-69393600	Weak transcription	K562	blood
8	chr6:69388400-69399800	Weak transcription	Fetal Lung	lung
9	chr6:69389600-69399800	Weak transcription	Brain Inferior Temporal Lobe	brain

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