Variant report

Variant	rs56075259
Chromosome Location	chr6:69447084-69447085
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:69444346..69447984-chr6:69448039..69451471,5	K562	blood:
2	chr6:69445033..69447210-chr6:69448039..69450265,2	K562	blood:
3	chr6:69438379..69440553-chr6:69446567..69448077,2	K562	blood:
4	chr6:69446451..69447989-chr6:69452138..69453692,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs55792962	1.00[EUR][1000 genomes]
rs55840344	1.00[EUR][1000 genomes]
rs55867330	1.00[EUR][1000 genomes]
rs55915457	1.00[EUR][1000 genomes]
rs56236762	1.00[EUR][1000 genomes]
rs56399771	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56998424	1.00[EUR][1000 genomes]
rs58108540	1.00[EUR][1000 genomes]
rs58548626	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59009249	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59310513	1.00[EUR][1000 genomes]
rs59384052	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59877292	1.00[EUR][1000 genomes]
rs60607705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60761802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60892917	1.00[EUR][1000 genomes]
rs60923857	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6910603	1.00[EUR][1000 genomes]
rs73461967	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461968	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461970	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461971	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461975	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461977	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461979	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461996	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73462002	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463903	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463905	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463911	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463915	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73463928	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73463932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73463934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73463935	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73463941	0.94[EUR][1000 genomes]
rs73463946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73463952	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73467839	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73467848	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73467883	1.00[EUR][1000 genomes]
rs73467884	1.00[EUR][1000 genomes]
rs73745828	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73745858	1.00[EUR][1000 genomes]
rs73745859	1.00[EUR][1000 genomes]
rs73745860	1.00[EUR][1000 genomes]
rs73745861	1.00[EUR][1000 genomes]
rs73745863	1.00[EUR][1000 genomes]
rs73745866	1.00[EUR][1000 genomes]
rs73745867	1.00[EUR][1000 genomes]
rs73745870	1.00[EUR][1000 genomes]
rs73745876	1.00[EUR][1000 genomes]
rs73745879	1.00[EUR][1000 genomes]
rs73745880	1.00[EUR][1000 genomes]
rs73745881	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69440800-69456800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr6:69440800-69456800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:69441000-69449400	Weak transcription	Brain Substantia Nigra	brain
4	chr6:69441200-69448000	Weak transcription	Brain Angular Gyrus	brain
5	chr6:69442600-69447600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:69444800-69457000	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:69445600-69448000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:69446200-69447600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:69446800-69447200	Weak transcription	K562	blood
10	chr6:69447000-69447400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:69447000-69447800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links