Variant report

Variant	rs73745866
Chromosome Location	chr6:69489087-69489088
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:69344782..69345485-chr6:69488556..69489102,2	K562	blood:
2	chr6:69282204..69283004-chr6:69488215..69489132,4	MCF-7	breast:
3	chr6:69355188..69356834-chr6:69487220..69489411,2	MCF-7	breast:
4	chr6:69347821..69348854-chr6:69488207..69489105,5	MCF-7	breast:
5	chr6:69281088..69283265-chr6:69488145..69489862,2	K562	blood:
6	chr6:69488300..69490179-chr6:69492286..69495172,2	K562	blood:
7	chr6:69347891..69348910-chr6:69488069..69489147,9	K562	blood:
8	chr6:69449624..69452933-chr6:69485444..69489658,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000135298	Chromatin interaction
ENSG00000230910	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs55792962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55840344	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55867330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55915457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56075259	1.00[EUR][1000 genomes]
rs56236762	1.00[EUR][1000 genomes]
rs56998424	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58108540	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59310513	1.00[EUR][1000 genomes]
rs59384052	1.00[EUR][1000 genomes]
rs59877292	1.00[EUR][1000 genomes]
rs60607705	1.00[EUR][1000 genomes]
rs60892917	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60923857	1.00[EUR][1000 genomes]
rs6910603	1.00[EUR][1000 genomes]
rs73463925	0.88[EUR][1000 genomes]
rs73463928	0.88[EUR][1000 genomes]
rs73463932	0.94[EUR][1000 genomes]
rs73463934	1.00[EUR][1000 genomes]
rs73463935	1.00[EUR][1000 genomes]
rs73463941	0.94[EUR][1000 genomes]
rs73463946	1.00[EUR][1000 genomes]
rs73463952	1.00[EUR][1000 genomes]
rs73467839	1.00[EUR][1000 genomes]
rs73467848	1.00[EUR][1000 genomes]
rs73467883	1.00[EUR][1000 genomes]
rs73467884	1.00[EUR][1000 genomes]
rs73745828	0.94[EUR][1000 genomes]
rs73745858	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73745859	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73745860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73745861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73745863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73745867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73745870	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73745876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73745879	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73745880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73745881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv886131	chr6:69480628-69545903	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69484800-69490000	Enhancers	Fetal Brain Female	brain
2	chr6:69485000-69490400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:69486200-69489600	Enhancers	Fetal Lung	lung
4	chr6:69487600-69489200	Active TSS	Brain Hippocampus Middle	brain
5	chr6:69487600-69489400	Enhancers	Fetal Stomach	stomach
6	chr6:69487600-69491200	Enhancers	Brain Germinal Matrix	brain
7	chr6:69487800-69490400	Enhancers	Fetal Brain Male	brain
8	chr6:69487800-69490600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:69487800-69490600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:69488000-69489200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:69488000-69489200	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr6:69488200-69489200	Active TSS	Brain Cingulate Gyrus	brain
13	chr6:69488200-69489200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:69488400-69490000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:69488600-69489200	Enhancers	Brain Angular Gyrus	brain
16	chr6:69488800-69489600	Flanking Active TSS	Brain Anterior Caudate	brain
17	chr6:69488800-69489600	Flanking Active TSS	Brain Substantia Nigra	brain

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