Variant report
| Variant | rs59877292 |
|---|---|
| Chromosome Location | chr6:69475314-69475315 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:69411088..69412917-chr6:69473045..69475700,2 | K562 | blood: | |
| 2 | chr6:69363582..69365214-chr6:69475043..69477739,2 | K562 | blood: | |
| 3 | chr6:69469056..69471849-chr6:69472009..69475947,4 | K562 | blood: | |
| 4 | chr6:69473849..69476721-chr6:69483757..69486701,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:39)
| rs_ID | r2[population] |
|---|---|
| rs55792962 | 1.00[EUR][1000 genomes] |
| rs55840344 | 1.00[EUR][1000 genomes] |
| rs55867330 | 1.00[EUR][1000 genomes] |
| rs55915457 | 1.00[EUR][1000 genomes] |
| rs56075259 | 1.00[EUR][1000 genomes] |
| rs56236762 | 1.00[EUR][1000 genomes] |
| rs56998424 | 1.00[EUR][1000 genomes] |
| rs58108540 | 1.00[EUR][1000 genomes] |
| rs59310513 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59384052 | 1.00[EUR][1000 genomes] |
| rs60607705 | 1.00[EUR][1000 genomes] |
| rs60892917 | 1.00[EUR][1000 genomes] |
| rs60923857 | 1.00[EUR][1000 genomes] |
| rs6910603 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73463925 | 0.88[EUR][1000 genomes] |
| rs73463928 | 0.88[EUR][1000 genomes] |
| rs73463932 | 0.94[EUR][1000 genomes] |
| rs73463934 | 1.00[EUR][1000 genomes] |
| rs73463935 | 1.00[EUR][1000 genomes] |
| rs73463941 | 0.94[EUR][1000 genomes] |
| rs73463946 | 1.00[EUR][1000 genomes] |
| rs73463952 | 1.00[EUR][1000 genomes] |
| rs73467839 | 1.00[EUR][1000 genomes] |
| rs73467848 | 1.00[EUR][1000 genomes] |
| rs73467883 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73467884 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73745828 | 0.94[EUR][1000 genomes] |
| rs73745858 | 1.00[EUR][1000 genomes] |
| rs73745859 | 1.00[EUR][1000 genomes] |
| rs73745860 | 1.00[EUR][1000 genomes] |
| rs73745861 | 1.00[EUR][1000 genomes] |
| rs73745863 | 1.00[EUR][1000 genomes] |
| rs73745866 | 1.00[EUR][1000 genomes] |
| rs73745867 | 1.00[EUR][1000 genomes] |
| rs73745870 | 1.00[EUR][1000 genomes] |
| rs73745876 | 1.00[EUR][1000 genomes] |
| rs73745879 | 1.00[EUR][1000 genomes] |
| rs73745880 | 1.00[EUR][1000 genomes] |
| rs73745881 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv886130 | chr6:68950298-69531957 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:69467200-69485000 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
| 2 | chr6:69468400-69480000 | Weak transcription | Fetal Lung | lung |
| 3 | chr6:69471600-69481600 | Weak transcription | Brain Anterior Caudate | brain |
