Variant report

Variant	rs73745859
Chromosome Location	chr6:69483108-69483109
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:69427276..69429730-chr6:69482240..69484850,2	K562	blood:
2	chr6:69361693..69363656-chr6:69482162..69484655,2	K562	blood:
3	chr6:69481523..69484520-chr6:69489886..69492873,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs55792962	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55840344	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55867330	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55915457	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56075259	1.00[EUR][1000 genomes]
rs56236762	1.00[EUR][1000 genomes]
rs56998424	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58108540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59310513	1.00[EUR][1000 genomes]
rs59384052	1.00[EUR][1000 genomes]
rs59877292	1.00[EUR][1000 genomes]
rs60607705	1.00[EUR][1000 genomes]
rs60892917	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60923857	1.00[EUR][1000 genomes]
rs6910603	1.00[EUR][1000 genomes]
rs73463925	0.88[EUR][1000 genomes]
rs73463928	0.88[EUR][1000 genomes]
rs73463932	0.94[EUR][1000 genomes]
rs73463934	1.00[EUR][1000 genomes]
rs73463935	1.00[EUR][1000 genomes]
rs73463941	0.94[EUR][1000 genomes]
rs73463946	1.00[EUR][1000 genomes]
rs73463952	1.00[EUR][1000 genomes]
rs73467839	1.00[EUR][1000 genomes]
rs73467848	1.00[EUR][1000 genomes]
rs73467883	1.00[EUR][1000 genomes]
rs73467884	1.00[EUR][1000 genomes]
rs73745828	0.94[EUR][1000 genomes]
rs73745858	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73745860	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73745861	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73745863	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73745866	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73745867	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73745870	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73745876	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73745879	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73745880	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73745881	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv886131	chr6:69480628-69545903	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69467200-69485000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:69478000-69485000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:69480400-69484800	Weak transcription	Fetal Lung	lung
4	chr6:69481200-69483800	Enhancers	Brain Cingulate Gyrus	brain
5	chr6:69481600-69484800	Weak transcription	K562	blood
6	chr6:69482000-69483400	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr6:69482200-69484600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:69482400-69484800	Weak transcription	Fetal Brain Female	brain
9	chr6:69482600-69483600	Weak transcription	Brain Anterior Caudate	brain
10	chr6:69482600-69484400	Weak transcription	Brain Hippocampus Middle	brain
11	chr6:69482800-69483200	Weak transcription	Brain Substantia Nigra	brain
12	chr6:69483000-69483600	Enhancers	Brain Angular Gyrus	brain

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