Variant report

Variant	rs58628875
Chromosome Location	chr3:159159174-159159175
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16830127	1.00[AMR][1000 genomes]
rs59241830	1.00[AMR][1000 genomes]
rs59460788	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60966177	1.00[AMR][1000 genomes]
rs61049877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61498446	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012448	1.00[AMR][1000 genomes]
rs73012471	1.00[AMR][1000 genomes]
rs73012478	1.00[AMR][1000 genomes]
rs73014360	1.00[AMR][1000 genomes]
rs73016391	1.00[AMR][1000 genomes]
rs73018304	1.00[AMR][1000 genomes]
rs73018382	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73024348	1.00[AMR][1000 genomes]
rs73024354	1.00[AMR][1000 genomes]
rs73031428	1.00[AMR][1000 genomes]
rs73031430	1.00[AMR][1000 genomes]
rs73031437	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1004990	chr3:159090974-159174954	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv877695	chr3:159152259-159254385	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159158800-159159200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:159158800-159159400	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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