Variant report

Variant	rs73016391
Chromosome Location	chr3:159140649-159140650
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16830127	1.00[AMR][1000 genomes]
rs58552621	1.00[AMR][1000 genomes]
rs58628875	1.00[AMR][1000 genomes]
rs59241830	1.00[AMR][1000 genomes]
rs59460788	1.00[AMR][1000 genomes]
rs61049877	1.00[AMR][1000 genomes]
rs61498446	1.00[AMR][1000 genomes]
rs73012448	1.00[AMR][1000 genomes]
rs73012471	1.00[AMR][1000 genomes]
rs73012478	1.00[AMR][1000 genomes]
rs73014360	1.00[AMR][1000 genomes]
rs73018304	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73018382	1.00[AMR][1000 genomes]
rs73024348	1.00[AMR][1000 genomes]
rs73024354	1.00[AMR][1000 genomes]
rs73031428	1.00[AMR][1000 genomes]
rs73031430	1.00[AMR][1000 genomes]
rs73031437	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv470971	chr3:158590928-159158217	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1004990	chr3:159090974-159174954	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159140600-159140800	Enhancers	Muscle Satellite Cultured Cells	--
2	chr3:159140600-159140800	Bivalent/Poised TSS	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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