Variant report

Variant	rs73031437
Chromosome Location	chr3:158972207-158972208
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16830127	1.00[AMR][1000 genomes]
rs58552621	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58628875	1.00[AMR][1000 genomes]
rs59241830	1.00[AMR][1000 genomes]
rs59460788	1.00[AMR][1000 genomes]
rs61049877	1.00[AMR][1000 genomes]
rs61498446	1.00[AMR][1000 genomes]
rs73012448	1.00[AMR][1000 genomes]
rs73012471	1.00[AMR][1000 genomes]
rs73012478	1.00[AMR][1000 genomes]
rs73014360	1.00[AMR][1000 genomes]
rs73016391	1.00[AMR][1000 genomes]
rs73018304	1.00[AMR][1000 genomes]
rs73018382	1.00[AMR][1000 genomes]
rs73031428	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73031430	1.00[AMR][1000 genomes]
rs73874792	1.00[AMR][1000 genomes]
rs73874793	1.00[AMR][1000 genomes]
rs73874794	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv470971	chr3:158590928-159158217	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv3426016	chr3:158676623-158979242	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1012602	chr3:158800182-159031618	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
6	esv3516735	chr3:158971378-158973215	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv3516736	chr3:158971378-158973215	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158972200-158977800	Weak transcription	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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