Variant report
| Variant | rs59460788 |
|---|---|
| Chromosome Location | chr3:159165226-159165227 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:159164204..159166736-chr3:159168250..159169842,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs16830127 | 1.00[AMR][1000 genomes] |
| rs58628875 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59241830 | 1.00[AMR][1000 genomes] |
| rs60966177 | 1.00[AMR][1000 genomes] |
| rs61049877 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61498446 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73012448 | 1.00[AMR][1000 genomes] |
| rs73012471 | 1.00[AMR][1000 genomes] |
| rs73012478 | 1.00[AMR][1000 genomes] |
| rs73014360 | 1.00[AMR][1000 genomes] |
| rs73016391 | 1.00[AMR][1000 genomes] |
| rs73018304 | 1.00[AMR][1000 genomes] |
| rs73018382 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73024348 | 1.00[AMR][1000 genomes] |
| rs73024354 | 1.00[AMR][1000 genomes] |
| rs73031428 | 1.00[AMR][1000 genomes] |
| rs73031430 | 1.00[AMR][1000 genomes] |
| rs73031437 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv998949 | chr3:158774806-159394550 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1004990 | chr3:159090974-159174954 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv877695 | chr3:159152259-159254385 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:159165200-159166800 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
