Variant report

Variant	rs58650754
Chromosome Location	chr14:39956744-39956745
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17109283	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17109326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56927251	1.00[AFR][1000 genomes]
rs57713609	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59467968	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7140496	0.91[AFR][1000 genomes]
rs7142564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7153086	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283459	0.84[AFR][1000 genomes]
rs73285561	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285577	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285584	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287551	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287561	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287568	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73289604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73291625	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8020247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3523177	chr14:39875036-40128325	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	esv3523178	chr14:39875036-40128325	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv832774	chr14:39897746-40060823	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv915558	chr14:39944831-40165370	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39952400-39958000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:39955400-39957800	Weak transcription	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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