Variant report
| Variant | rs8020247 |
|---|---|
| Chromosome Location | chr14:39954452-39954453 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:6)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:6 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CTAGE5-1 | chr14:39954221-39954496 | XLOC_010811 |
| 2 | lnc-CTAGE5-1 | chr14:39954221-39954461 | XLOC_010811 |
| 3 | lnc-CTAGE5-1 | chr14:39954221-39954461 | XLOC_010811 |
| 4 | lnc-CTAGE5-1 | chr14:39954220-39954461 | ENSG00000258526 |
| 5 | lnc-CTAGE5-1 | chr14:39954221-39954461 | ENSG00000258526 |
| 6 | lnc-CTAGE5-1 | chr14:39954221-39954461 | XLOC_010811 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs17109160 | 0.94[YRI][hapmap] |
| rs17109162 | 1.00[YRI][hapmap] |
| rs17109283 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17109326 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56927251 | 1.00[AFR][1000 genomes] |
| rs57713609 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58650754 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59467968 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7140496 | 0.91[AFR][1000 genomes] |
| rs7142564 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7153086 | 1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73283459 | 0.84[AFR][1000 genomes] |
| rs73285561 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73285577 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73285584 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73287551 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73287561 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73287568 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73289604 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73291625 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73293640 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3523177 | chr14:39875036-40128325 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 35 gene(s) | inside rSNPs | diseases |
| 2 | esv3523178 | chr14:39875036-40128325 | Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 35 gene(s) | inside rSNPs | diseases |
| 3 | nsv832774 | chr14:39897746-40060823 | Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 35 gene(s) | inside rSNPs | diseases |
| 4 | nsv915558 | chr14:39944831-40165370 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:39939000-39954600 | Weak transcription | Brain Hippocampus Middle | brain |
| 2 | chr14:39952400-39958000 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
