Variant report

Variant	rs73287561
Chromosome Location	chr14:39922270-39922271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17109283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17109326	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56927251	0.97[AFR][1000 genomes]
rs57713609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58650754	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59467968	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7140496	0.91[AFR][1000 genomes]
rs7142564	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7153086	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283459	0.84[AFR][1000 genomes]
rs73285561	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285577	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285584	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73289604	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73291625	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293640	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8020247	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037183	chr14:39736939-39949233	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv542048	chr14:39736939-39949233	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv3523177	chr14:39875036-40128325	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	esv3523178	chr14:39875036-40128325	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
5	nsv832774	chr14:39897746-40060823	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39918600-39922400	Weak transcription	Stomach Mucosa	stomach
2	chr14:39921600-39922400	Enhancers	GM12878-XiMat	blood
3	chr14:39921600-39922800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr14:39922000-39922400	Enhancers	Brain Cingulate Gyrus	brain
5	chr14:39922000-39922400	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr14:39922200-39922600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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