Variant report

Variant	rs7142564
Chromosome Location	chr14:39976940-39976941
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:39976243..39977763-chr17:41466303..41467864,2	K562	blood:
2	chr14:39976243..39977743-chr17:41464211..41467185,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000188825	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17109160	0.94[YRI][hapmap]
rs17109162	1.00[YRI][hapmap]
rs17109283	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17109326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56927251	1.00[AFR][1000 genomes]
rs57713609	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58650754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59467968	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7140496	0.91[AFR][1000 genomes]
rs7153086	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283459	0.84[AFR][1000 genomes]
rs73285561	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285577	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285584	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287551	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287561	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287568	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73289604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73291625	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8020247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3523177	chr14:39875036-40128325	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	esv3523178	chr14:39875036-40128325	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv832774	chr14:39897746-40060823	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv915558	chr14:39944831-40165370	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv456212	chr14:39957437-40096888	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv564418	chr14:39957437-40096888	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39975000-39977400	Weak transcription	Pancreas	Pancrea

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