Variant report

Variant	rs17109162
Chromosome Location	chr14:39840718-39840719
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:39834152..39839984-chr14:39840314..39846059,5	MCF-7	breast:
2	chr14:39572245..39573793-chr14:39838003..39840919,2	MCF-7	breast:
3	chr14:39570993..39573887-chr14:39839322..39841759,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100934	Chromatin interaction
ENSG00000271424	Chromatin interaction
ENSG00000258651	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs17109160	0.93[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57135924	1.00[AMR][1000 genomes]
rs57489268	1.00[AMR][1000 genomes]
rs58013138	1.00[AMR][1000 genomes]
rs58270193	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60018719	1.00[AMR][1000 genomes]
rs60852916	1.00[AMR][1000 genomes]
rs7142564	1.00[YRI][hapmap]
rs7153086	0.89[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap]
rs73277456	1.00[AMR][1000 genomes]
rs73277460	1.00[AMR][1000 genomes]
rs73277462	1.00[AMR][1000 genomes]
rs73277469	1.00[AMR][1000 genomes]
rs73277476	1.00[AMR][1000 genomes]
rs73277477	1.00[AMR][1000 genomes]
rs73277479	1.00[AMR][1000 genomes]
rs73277480	1.00[AMR][1000 genomes]
rs73277482	1.00[AMR][1000 genomes]
rs73277483	1.00[AMR][1000 genomes]
rs73277488	1.00[AMR][1000 genomes]
rs73277497	1.00[AMR][1000 genomes]
rs73277498	1.00[AMR][1000 genomes]
rs73277502	1.00[AMR][1000 genomes]
rs73279314	1.00[AMR][1000 genomes]
rs73279323	1.00[AMR][1000 genomes]
rs73279344	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73279364	1.00[AMR][1000 genomes]
rs73279368	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283438	1.00[AMR][1000 genomes]
rs73283459	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287581	1.00[AMR][1000 genomes]
rs73289606	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037183	chr14:39736939-39949233	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv542048	chr14:39736939-39949233	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39757400-39843800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr14:39770800-39872400	Weak transcription	Colonic Mucosa	Colon
3	chr14:39792800-39841600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr14:39794400-39843200	Weak transcription	HUVEC	blood vessel
5	chr14:39802000-39841200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr14:39803000-39845800	Weak transcription	NHEK	skin
7	chr14:39803200-39843400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr14:39803200-39845800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr14:39803400-39843800	Weak transcription	HMEC	breast
10	chr14:39808400-39841200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr14:39812200-39845800	Weak transcription	Stomach Mucosa	stomach
12	chr14:39816800-39843200	Weak transcription	Hela-S3	cervix
13	chr14:39816800-39850200	Weak transcription	Fetal Kidney	kidney
14	chr14:39817400-39843800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr14:39818800-39845200	Weak transcription	Placenta	Placenta
16	chr14:39818800-39867200	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr14:39826000-39843200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr14:39833800-39841400	Weak transcription	Osteobl	bone
19	chr14:39834000-39851600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr14:39834600-39846000	Weak transcription	Primary hematopoietic stem cells	blood
21	chr14:39834600-39851600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr14:39834800-39840800	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr14:39834800-39846000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr14:39835000-39841000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr14:39835000-39851600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr14:39835200-39851600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr14:39835400-39851400	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr14:39835400-39872400	Weak transcription	Fetal Muscle Leg	muscle
29	chr14:39836000-39845600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr14:39836200-39872800	Weak transcription	Esophagus	oesophagus
31	chr14:39836400-39870600	Weak transcription	Gastric	stomach
32	chr14:39836600-39843400	Weak transcription	NH-A	brain
33	chr14:39836600-39845800	Weak transcription	Right Atrium	heart
34	chr14:39836600-39852600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr14:39836800-39845800	Weak transcription	Brain Anterior Caudate	brain
36	chr14:39836800-39845800	Weak transcription	Right Ventricle	heart
37	chr14:39837000-39852600	Weak transcription	Primary T cells from cord blood	blood
38	chr14:39837600-39845800	Weak transcription	Brain Angular Gyrus	brain
39	chr14:39837600-39845800	Weak transcription	Colon Smooth Muscle	Colon
40	chr14:39837600-39845800	Weak transcription	Fetal Heart	heart
41	chr14:39837600-39845800	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr14:39837600-39846000	Weak transcription	Brain Hippocampus Middle	brain
43	chr14:39837600-39846000	Weak transcription	HSMMtube	muscle
44	chr14:39837800-39845800	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr14:39837800-39851600	Weak transcription	Dnd41	blood
46	chr14:39838000-39842400	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr14:39838400-39841000	Strong transcription	HepG2	liver
48	chr14:39838400-39841400	Strong transcription	Liver	Liver
49	chr14:39838400-39845600	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr14:39838600-39845800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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