Variant report

Variant	rs60852916
Chromosome Location	chr14:39763911-39763912
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:39763084..39765244-chr14:39767699..39769276,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs17109160	1.00[AMR][1000 genomes]
rs17109162	1.00[AMR][1000 genomes]
rs57135924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57489268	1.00[AMR][1000 genomes]
rs58013138	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58270193	1.00[AMR][1000 genomes]
rs59877253	0.94[AFR][1000 genomes]
rs60018719	1.00[AMR][1000 genomes]
rs73275091	0.89[AFR][1000 genomes]
rs73277456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277469	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277476	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277477	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277479	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277480	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277482	1.00[AMR][1000 genomes]
rs73277483	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277488	1.00[AMR][1000 genomes]
rs73277497	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277498	1.00[AMR][1000 genomes]
rs73277502	1.00[AMR][1000 genomes]
rs73279314	1.00[AMR][1000 genomes]
rs73279323	1.00[AMR][1000 genomes]
rs73279344	1.00[AMR][1000 genomes]
rs73279364	1.00[AMR][1000 genomes]
rs73279368	1.00[AMR][1000 genomes]
rs73283438	1.00[AMR][1000 genomes]
rs73283459	1.00[AMR][1000 genomes]
rs73287581	1.00[AMR][1000 genomes]
rs73289606	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053133	chr14:39657535-39770729	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1037183	chr14:39736939-39949233	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv542048	chr14:39736939-39949233	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv977461	chr14:39762414-39770640	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39738200-39766200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr14:39738200-39813800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr14:39738800-39764800	Weak transcription	NHDF-Ad	bronchial
4	chr14:39739200-39764000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr14:39739800-39766400	Weak transcription	Aorta	Aorta
6	chr14:39741200-39764200	Weak transcription	Spleen	Spleen
7	chr14:39744600-39769800	Weak transcription	Pancreas	Pancrea
8	chr14:39745400-39764000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr14:39745600-39764000	Weak transcription	HMEC	breast
10	chr14:39746200-39776600	Weak transcription	K562	blood
11	chr14:39746400-39771200	Weak transcription	Fetal Heart	heart
12	chr14:39749400-39764000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr14:39749400-39764200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr14:39749400-39766400	Weak transcription	Right Ventricle	heart
15	chr14:39749400-39785400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr14:39749600-39765200	Weak transcription	HUVEC	blood vessel
17	chr14:39749600-39771200	Weak transcription	Fetal Kidney	kidney
18	chr14:39752600-39764200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr14:39752600-39764200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr14:39752600-39769000	Weak transcription	Colon Smooth Muscle	Colon
21	chr14:39752600-39808200	Weak transcription	Stomach Mucosa	stomach
22	chr14:39753000-39764200	Weak transcription	A549	lung
23	chr14:39755400-39775800	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr14:39755400-39783400	Strong transcription	Liver	Liver
25	chr14:39755600-39767600	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr14:39755600-39780400	Strong transcription	HepG2	liver
27	chr14:39755600-39797200	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr14:39756000-39764000	Weak transcription	Brain Hippocampus Middle	brain
29	chr14:39756000-39764600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr14:39756000-39788600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr14:39756200-39776000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr14:39756200-39828400	Weak transcription	Brain Germinal Matrix	brain
33	chr14:39756400-39773200	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr14:39756400-39774000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr14:39756600-39764000	Weak transcription	Fetal Brain Female	brain
36	chr14:39756600-39819600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr14:39756800-39771200	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr14:39756800-39797800	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr14:39757000-39783400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr14:39757200-39773800	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr14:39757400-39764200	Weak transcription	Ovary	ovary
42	chr14:39757400-39771200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr14:39757400-39796000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr14:39757400-39843800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr14:39758400-39767600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr14:39758600-39764200	Weak transcription	Psoas Muscle	Psoas
47	chr14:39758600-39767400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr14:39758800-39764200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr14:39758800-39766000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr14:39759400-39770200	Weak transcription	Colonic Mucosa	Colon

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