Variant report

Variant	rs73277476
Chromosome Location	chr14:39776097-39776098
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs17109160	1.00[AMR][1000 genomes]
rs17109162	1.00[AMR][1000 genomes]
rs57135924	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57489268	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58013138	1.00[AMR][1000 genomes]
rs58270193	1.00[AMR][1000 genomes]
rs59541938	0.84[AFR][1000 genomes]
rs59877253	0.84[AFR][1000 genomes]
rs60018719	1.00[AMR][1000 genomes]
rs60852916	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277456	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277460	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277462	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277469	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277477	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277480	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277482	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277488	1.00[AMR][1000 genomes]
rs73277497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277498	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277502	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73279314	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73279323	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73279344	1.00[AMR][1000 genomes]
rs73279364	1.00[AMR][1000 genomes]
rs73279368	1.00[AMR][1000 genomes]
rs73283438	1.00[AMR][1000 genomes]
rs73283459	1.00[AMR][1000 genomes]
rs73287581	1.00[AMR][1000 genomes]
rs73289606	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037183	chr14:39736939-39949233	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv542048	chr14:39736939-39949233	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39738200-39813800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr14:39746200-39776600	Weak transcription	K562	blood
3	chr14:39749400-39785400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr14:39752600-39808200	Weak transcription	Stomach Mucosa	stomach
5	chr14:39755400-39783400	Strong transcription	Liver	Liver
6	chr14:39755600-39780400	Strong transcription	HepG2	liver
7	chr14:39755600-39797200	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr14:39756000-39788600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr14:39756200-39828400	Weak transcription	Brain Germinal Matrix	brain
10	chr14:39756600-39819600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr14:39756800-39797800	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr14:39757000-39783400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr14:39757400-39796000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr14:39757400-39843800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr14:39759400-39801800	Weak transcription	NHLF	lung
16	chr14:39762400-39801600	Weak transcription	Fetal Brain Male	brain
17	chr14:39764000-39786200	Weak transcription	Brain Substantia Nigra	brain
18	chr14:39764400-39785400	Weak transcription	Esophagus	oesophagus
19	chr14:39764600-39785600	Weak transcription	Gastric	stomach
20	chr14:39764600-39785600	Weak transcription	Psoas Muscle	Psoas
21	chr14:39764600-39790000	Weak transcription	Fetal Brain Female	brain
22	chr14:39764600-39808200	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr14:39764600-39818400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr14:39764800-39778200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr14:39764800-39802400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr14:39764800-39805200	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr14:39765000-39785800	Weak transcription	Lung	lung
28	chr14:39765400-39785600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr14:39765600-39789400	Weak transcription	HMEC	breast
30	chr14:39765600-39803800	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr14:39765600-39807800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr14:39765800-39785400	Weak transcription	Brain Angular Gyrus	brain
33	chr14:39766000-39783000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr14:39766800-39790600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr14:39766800-39791800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr14:39767000-39785400	Weak transcription	Aorta	Aorta
37	chr14:39767000-39785400	Weak transcription	Ovary	ovary
38	chr14:39767000-39785400	Weak transcription	Spleen	Spleen
39	chr14:39767000-39785600	Weak transcription	Fetal Muscle Leg	muscle
40	chr14:39767000-39796000	Weak transcription	Thymus	Thymus
41	chr14:39767200-39801400	Weak transcription	Brain Hippocampus Middle	brain
42	chr14:39767200-39801600	Weak transcription	Right Ventricle	heart
43	chr14:39767200-39833800	Weak transcription	Small Intestine	intestine
44	chr14:39767400-39778000	Weak transcription	GM12878-XiMat	blood
45	chr14:39767400-39785200	Weak transcription	Brain Anterior Caudate	brain
46	chr14:39767600-39785400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr14:39768800-39785200	Weak transcription	NHEK	skin
48	chr14:39769600-39785600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr14:39769800-39796000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr14:39769800-39796000	Weak transcription	Dnd41	blood

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