Variant report

Variant	rs73277469
Chromosome Location	chr14:39766285-39766286
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs17109160	1.00[AMR][1000 genomes]
rs17109162	1.00[AMR][1000 genomes]
rs57135924	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57489268	1.00[AMR][1000 genomes]
rs58013138	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58270193	1.00[AMR][1000 genomes]
rs59877253	0.89[AFR][1000 genomes]
rs60018719	1.00[AMR][1000 genomes]
rs60852916	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275091	0.83[AFR][1000 genomes]
rs73277456	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277460	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277462	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277476	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277477	1.00[AMR][1000 genomes]
rs73277479	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277480	1.00[AMR][1000 genomes]
rs73277482	1.00[AMR][1000 genomes]
rs73277483	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277488	1.00[AMR][1000 genomes]
rs73277497	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277498	1.00[AMR][1000 genomes]
rs73277502	1.00[AMR][1000 genomes]
rs73279314	1.00[AMR][1000 genomes]
rs73279323	1.00[AMR][1000 genomes]
rs73279344	1.00[AMR][1000 genomes]
rs73279364	1.00[AMR][1000 genomes]
rs73279368	1.00[AMR][1000 genomes]
rs73283438	1.00[AMR][1000 genomes]
rs73283459	1.00[AMR][1000 genomes]
rs73287581	1.00[AMR][1000 genomes]
rs73289606	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053133	chr14:39657535-39770729	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1037183	chr14:39736939-39949233	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv542048	chr14:39736939-39949233	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv977461	chr14:39762414-39770640	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39738200-39813800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr14:39739800-39766400	Weak transcription	Aorta	Aorta
3	chr14:39744600-39769800	Weak transcription	Pancreas	Pancrea
4	chr14:39746200-39776600	Weak transcription	K562	blood
5	chr14:39746400-39771200	Weak transcription	Fetal Heart	heart
6	chr14:39749400-39766400	Weak transcription	Right Ventricle	heart
7	chr14:39749400-39785400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr14:39749600-39771200	Weak transcription	Fetal Kidney	kidney
9	chr14:39752600-39769000	Weak transcription	Colon Smooth Muscle	Colon
10	chr14:39752600-39808200	Weak transcription	Stomach Mucosa	stomach
11	chr14:39755400-39775800	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr14:39755400-39783400	Strong transcription	Liver	Liver
13	chr14:39755600-39767600	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr14:39755600-39780400	Strong transcription	HepG2	liver
15	chr14:39755600-39797200	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr14:39756000-39788600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr14:39756200-39776000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr14:39756200-39828400	Weak transcription	Brain Germinal Matrix	brain
19	chr14:39756400-39773200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr14:39756400-39774000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr14:39756600-39819600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr14:39756800-39771200	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr14:39756800-39797800	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr14:39757000-39783400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr14:39757200-39773800	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr14:39757400-39771200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr14:39757400-39796000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr14:39757400-39843800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr14:39758400-39767600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr14:39758600-39767400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr14:39759400-39770200	Weak transcription	Colonic Mucosa	Colon
32	chr14:39759400-39801800	Weak transcription	NHLF	lung
33	chr14:39760000-39775800	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr14:39760600-39767400	Strong transcription	Adipose Nuclei	Adipose
35	chr14:39760600-39767400	Strong transcription	Skeletal Muscle Female	skeletal muscle
36	chr14:39760800-39771200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr14:39761000-39775200	Strong transcription	Primary B cells from peripheral blood	blood
38	chr14:39761600-39773400	Strong transcription	Fetal Intestine Large	intestine
39	chr14:39761800-39771800	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr14:39762200-39767000	Strong transcription	Osteobl	bone
41	chr14:39762200-39774200	Strong transcription	Duodenum Mucosa	Duodenum
42	chr14:39762400-39801600	Weak transcription	Fetal Brain Male	brain
43	chr14:39762600-39772600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr14:39762600-39774400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr14:39763000-39767200	Strong transcription	Dnd41	blood
46	chr14:39763200-39766800	Strong transcription	Fetal Thymus	thymus
47	chr14:39763200-39767000	Strong transcription	Fetal Muscle Trunk	muscle
48	chr14:39763200-39772200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr14:39763400-39766600	Strong transcription	Fetal Stomach	stomach
50	chr14:39763400-39767000	Strong transcription	Fetal Muscle Leg	muscle

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