Variant report

Variant	rs73285584
Chromosome Location	chr14:39885641-39885642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:39882950..39886541-chr14:39887581..39892204,4	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17109283	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17109326	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56927251	0.95[AFR][1000 genomes]
rs57713609	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58650754	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59467968	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7140496	0.86[AFR][1000 genomes]
rs7142564	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7153086	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283459	0.86[AFR][1000 genomes]
rs73285561	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285577	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287551	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287561	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287568	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73289604	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73291625	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293640	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8020247	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037183	chr14:39736939-39949233	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv542048	chr14:39736939-39949233	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv3523177	chr14:39875036-40128325	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	esv3523178	chr14:39875036-40128325	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39862000-39886000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:39863400-39891600	Weak transcription	Small Intestine	intestine
3	chr14:39864600-39898800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr14:39865000-39891200	Weak transcription	Psoas Muscle	Psoas
5	chr14:39865000-39898200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr14:39869000-39886200	Weak transcription	Aorta	Aorta
7	chr14:39869000-39886200	Weak transcription	Ovary	ovary
8	chr14:39869000-39895600	Weak transcription	Hela-S3	cervix
9	chr14:39871000-39886200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr14:39881200-39886800	ZNF genes & repeats	Primary B cells from cord blood	blood
11	chr14:39881200-39887200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr14:39881600-39887200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
13	chr14:39882200-39895400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr14:39884000-39886200	Weak transcription	Left Ventricle	heart
15	chr14:39884600-39886000	Weak transcription	Thymus	Thymus
16	chr14:39884800-39886600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
17	chr14:39885000-39886600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
18	chr14:39885000-39886800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr14:39885000-39887800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
20	chr14:39885200-39885800	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr14:39885200-39886400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr14:39885200-39886400	ZNF genes & repeats	Fetal Heart	heart
23	chr14:39885200-39886600	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
24	chr14:39885200-39886600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
25	chr14:39885200-39886600	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
26	chr14:39885200-39886800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
27	chr14:39885200-39886800	ZNF genes & repeats	HepG2	liver
28	chr14:39885200-39891400	Weak transcription	Gastric	stomach
29	chr14:39885400-39886200	Weak transcription	Fetal Stomach	stomach
30	chr14:39885400-39886400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr14:39885400-39886600	ZNF genes & repeats	Fetal Lung	lung
32	chr14:39885600-39886400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr14:39885600-39886400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr14:39885600-39886600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
35	chr14:39885600-39886800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
36	chr14:39885600-39886800	ZNF genes & repeats	Primary T cells from cord blood	blood
37	chr14:39885600-39886800	ZNF genes & repeats	Duodenum Mucosa	Duodenum

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