Variant report

Variant	rs58676982
Chromosome Location	chr9:97420008-97420009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs58889952	1.00[AMR][1000 genomes]
rs59596055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60553517	1.00[AMR][1000 genomes]
rs7037239	1.00[AMR][1000 genomes]
rs73521196	1.00[AMR][1000 genomes]
rs73521201	1.00[AMR][1000 genomes]
rs73523253	1.00[AMR][1000 genomes]
rs73523261	1.00[AMR][1000 genomes]
rs73523275	1.00[AMR][1000 genomes]
rs73523277	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73523285	1.00[AMR][1000 genomes]
rs73523301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73530354	1.00[AMR][1000 genomes]
rs73532323	1.00[AMR][1000 genomes]
rs73532332	1.00[AMR][1000 genomes]
rs73532340	1.00[AMR][1000 genomes]
rs73532355	1.00[AMR][1000 genomes]
rs73534109	1.00[AMR][1000 genomes]
rs73534113	1.00[AMR][1000 genomes]
rs73534154	1.00[AMR][1000 genomes]
rs73534159	1.00[AMR][1000 genomes]
rs73536042	1.00[AMR][1000 genomes]
rs73536067	1.00[AMR][1000 genomes]
rs73536074	1.00[AMR][1000 genomes]
rs73537487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73538140	1.00[AMR][1000 genomes]
rs73539427	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73539428	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7858775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9696490	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97418200-97420200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr9:97418800-97420200	Enhancers	Thymus	Thymus
3	chr9:97419000-97420400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr9:97419000-97420600	Enhancers	Fetal Thymus	thymus
5	chr9:97419400-97420200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:97419800-97427200	Weak transcription	HSMM	muscle
7	chr9:97420000-97427800	Weak transcription	HSMMtube	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links