Variant report

Variant	rs58889952
Chromosome Location	chr9:97416081-97416082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97415275..97418295-chr9:97425783..97428113,3	MCF-7	breast:
2	chr9:97389422..97393205-chr9:97411609..97416128,4	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs58676982	1.00[AMR][1000 genomes]
rs59596055	1.00[AMR][1000 genomes]
rs60553517	1.00[AMR][1000 genomes]
rs7037239	1.00[AMR][1000 genomes]
rs73521196	1.00[AMR][1000 genomes]
rs73521201	1.00[AMR][1000 genomes]
rs73523253	1.00[AMR][1000 genomes]
rs73523261	1.00[AMR][1000 genomes]
rs73523275	1.00[AMR][1000 genomes]
rs73523277	1.00[AMR][1000 genomes]
rs73523285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73523301	1.00[AMR][1000 genomes]
rs73524810	1.00[AMR][1000 genomes]
rs73530354	1.00[AMR][1000 genomes]
rs73532323	1.00[AMR][1000 genomes]
rs73532332	1.00[AMR][1000 genomes]
rs73532340	1.00[AMR][1000 genomes]
rs73532355	1.00[AMR][1000 genomes]
rs73534109	1.00[AMR][1000 genomes]
rs73534113	1.00[AMR][1000 genomes]
rs73534154	1.00[AMR][1000 genomes]
rs73534159	1.00[AMR][1000 genomes]
rs73536042	1.00[AMR][1000 genomes]
rs73536067	1.00[AMR][1000 genomes]
rs73536074	1.00[AMR][1000 genomes]
rs73537487	1.00[AMR][1000 genomes]
rs73539427	1.00[AMR][1000 genomes]
rs73539428	1.00[AMR][1000 genomes]
rs7858775	1.00[AMR][1000 genomes]
rs9696490	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97402400-97420000	Weak transcription	Right Atrium	heart
2	chr9:97405800-97418400	Weak transcription	Fetal Stomach	stomach
3	chr9:97410000-97418000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr9:97411000-97416200	Weak transcription	Lung	lung
5	chr9:97411000-97417800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:97411800-97418000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:97412000-97417800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr9:97412000-97417800	Weak transcription	Fetal Muscle Leg	muscle
9	chr9:97412200-97416600	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr9:97412200-97417800	Weak transcription	Primary B cells from cord blood	blood
11	chr9:97412200-97417800	Weak transcription	HSMMtube	muscle
12	chr9:97412200-97418400	Weak transcription	HSMM	muscle
13	chr9:97412400-97417800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr9:97413600-97416200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr9:97413600-97416200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr9:97413600-97416200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr9:97413600-97416200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr9:97413600-97416200	Weak transcription	NHEK	skin
19	chr9:97413800-97416200	Weak transcription	HMEC	breast
20	chr9:97413800-97418200	Weak transcription	Gastric	stomach
21	chr9:97415200-97416200	Enhancers	Fetal Muscle Trunk	muscle
22	chr9:97415400-97416800	Enhancers	Spleen	Spleen
23	chr9:97415600-97416400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr9:97415600-97416800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr9:97416000-97416400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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