Variant report

Variant	rs73521196
Chromosome Location	chr9:97402341-97402342
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTBP2	chr9:97402108-97403283	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr9:97400938-97402355	HL-60	blood:	n/a	n/a
3	HDAC2	chr9:97400903-97402384	MCF-7	breast:	n/a	chr9:97401213-97401221
4	MAX	chr9:97400579-97402724	MCF-7	breast:	n/a	chr9:97402273-97402284 chr9:97402335-97402344 chr9:97401961-97401971 chr9:97402180-97402190 chr9:97401965-97401974
5	MAX	chr9:97402025-97402668	H1-hESC	embryonic stem cell:	n/a	chr9:97402273-97402284 chr9:97402335-97402344 chr9:97402180-97402190
6	MYC	chr9:97401759-97402400	NB4	blood:	n/a	chr9:97402273-97402284 chr9:97402335-97402344 chr9:97401961-97401971 chr9:97402180-97402190 chr9:97401965-97401974
7	JUND	chr9:97402303-97402686	H1-hESC	embryonic stem cell:	n/a	n/a
8	MAX	chr9:97401229-97402727	H1-hESC	embryonic stem cell:	n/a	chr9:97402273-97402284 chr9:97402335-97402344 chr9:97401961-97401971 chr9:97402180-97402190 chr9:97401965-97401974
9	NANOG	chr9:97402330-97402726	H1-hESC	embryonic stem cell:	n/a	n/a
10	SIN3A	chr9:97401850-97402686	H1-hESC	embryonic stem cell:	n/a	chr9:97401972-97401983
11	SIN3AK20	chr9:97400822-97402382	MCF-7	breast:	n/a	n/a
12	POLR2A	chr9:97402246-97402685	HUVEC	blood vessel:	n/a	n/a
13	MAX	chr9:97402021-97402647	H1-hESC	embryonic stem cell:	n/a	chr9:97402273-97402284 chr9:97402335-97402344 chr9:97402180-97402190
14	TCF12	chr9:97402282-97402738	H1-hESC	embryonic stem cell:	n/a	n/a
15	SUZ12	chr9:97400708-97402723	NT2-D1	testis:	n/a	n/a
16	NR2F2	chr9:97400853-97402433	MCF-7	breast:	n/a	n/a
17	MAX	chr9:97401851-97402541	NB4	blood:	n/a	chr9:97402273-97402284 chr9:97402335-97402344 chr9:97401961-97401971 chr9:97402180-97402190 chr9:97401965-97401974
18	CTCF	chr9:97402320-97402470	HUVEC	blood vessel:	n/a	n/a
19	MXI1	chr9:97402062-97402513	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97316754..97318987-chr9:97400777..97403144,3	MCF-7	breast:

Variant related genes	Relation type
FBP1	TF binding region
ENSG00000231806	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs58676982	1.00[AMR][1000 genomes]
rs58889952	1.00[AMR][1000 genomes]
rs59596055	1.00[AMR][1000 genomes]
rs60553517	1.00[AMR][1000 genomes]
rs7037239	1.00[AMR][1000 genomes]
rs73521201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73523253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73523261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73523275	1.00[AMR][1000 genomes]
rs73523277	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73523285	1.00[AMR][1000 genomes]
rs73523301	1.00[AMR][1000 genomes]
rs73524810	1.00[AMR][1000 genomes]
rs73530354	1.00[AMR][1000 genomes]
rs73532323	1.00[AMR][1000 genomes]
rs73532332	1.00[AMR][1000 genomes]
rs73532340	1.00[AMR][1000 genomes]
rs73532355	1.00[AMR][1000 genomes]
rs73534109	1.00[AMR][1000 genomes]
rs73534113	1.00[AMR][1000 genomes]
rs73534154	1.00[AMR][1000 genomes]
rs73534159	1.00[AMR][1000 genomes]
rs73536042	1.00[AMR][1000 genomes]
rs73536067	1.00[AMR][1000 genomes]
rs73536074	1.00[AMR][1000 genomes]
rs73537487	1.00[AMR][1000 genomes]
rs73539427	1.00[AMR][1000 genomes]
rs73539428	1.00[AMR][1000 genomes]
rs7858775	1.00[AMR][1000 genomes]
rs9696490	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv614918	chr9:97380597-97412037	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97400600-97402400	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:97401000-97402400	Flanking Active TSS	Primary B cells from cord blood	blood
3	chr9:97401000-97402400	Flanking Active TSS	Primary hematopoietic stem cells	blood
4	chr9:97401000-97402400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
5	chr9:97401000-97402400	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr9:97401000-97402400	Active TSS	Right Atrium	heart
7	chr9:97401000-97402600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
8	chr9:97401000-97402600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
9	chr9:97401000-97402600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr9:97401000-97402600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:97401000-97402600	Active TSS	Rectal Smooth Muscle	rectum
12	chr9:97401000-97402800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
13	chr9:97401000-97402800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
14	chr9:97401000-97403000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
15	chr9:97401200-97402400	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr9:97401200-97402400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:97401200-97402400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
18	chr9:97401200-97402400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
19	chr9:97401200-97402400	Active TSS	Rectal Mucosa Donor 31	rectum
20	chr9:97401200-97402600	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:97401200-97402600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
22	chr9:97401400-97402400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr9:97401400-97402400	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr9:97401400-97402400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
25	chr9:97401400-97402400	Active TSS	Primary T helper naive cells from peripheral blood	blood
26	chr9:97401400-97402400	Active TSS	Brain Anterior Caudate	brain
27	chr9:97401400-97402400	Bivalent Enhancer	Fetal Brain Male	brain
28	chr9:97401400-97402400	Active TSS	Pancreas	Pancrea
29	chr9:97401400-97402600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
30	chr9:97401400-97402600	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
31	chr9:97401400-97402800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
32	chr9:97401600-97402400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr9:97401600-97402400	Active TSS	Primary T cells from cord blood	blood
34	chr9:97401600-97402400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
35	chr9:97401600-97402400	Active TSS	Colon Smooth Muscle	Colon
36	chr9:97401600-97402600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
37	chr9:97401600-97402600	Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr9:97401600-97402800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
39	chr9:97401600-97403000	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr9:97401800-97402400	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr9:97401800-97402400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr9:97401800-97402400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
43	chr9:97401800-97402400	Active TSS	Right Ventricle	heart
44	chr9:97401800-97402400	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
45	chr9:97401800-97402400	Bivalent/Poised TSS	Thymus	Thymus
46	chr9:97401800-97402400	Active TSS	Osteobl	bone
47	chr9:97401800-97402600	Active TSS	GM12878-XiMat	blood
48	chr9:97402000-97402400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
49	chr9:97402000-97402400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
50	chr9:97402000-97402400	Flanking Active TSS	Primary B cells from peripheral blood	blood

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