Variant report

Variant	rs73532340
Chromosome Location	chr9:97528431-97528432
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97488223..97490513-chr9:97527802..97530003,2	MCF-7	breast:
2	chr9:97528259..97530073-chr9:97535498..97538318,2	MCF-7	breast:
3	chr9:97527795..97528531-chr9:97545131..97545859,2	MCF-7	breast:
4	chr9:97525840..97529015-chr9:97532404..97535563,3	K562	blood:

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs12553916	0.82[AFR][1000 genomes]
rs1382411	0.86[AFR][1000 genomes]
rs1382412	0.86[AFR][1000 genomes]
rs191654	0.82[AFR][1000 genomes]
rs2675168	0.82[AFR][1000 genomes]
rs356149	0.82[AFR][1000 genomes]
rs365465	0.82[AFR][1000 genomes]
rs3887267	0.82[AFR][1000 genomes]
rs397783	0.82[AFR][1000 genomes]
rs397806	0.82[AFR][1000 genomes]
rs41316526	0.86[AFR][1000 genomes]
rs422502	0.82[AFR][1000 genomes]
rs448899	0.82[AFR][1000 genomes]
rs58281499	0.82[AFR][1000 genomes]
rs58676982	1.00[AMR][1000 genomes]
rs58889952	1.00[AMR][1000 genomes]
rs59596055	1.00[AMR][1000 genomes]
rs60120	0.82[AFR][1000 genomes]
rs60553517	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60856972	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61086657	0.82[AFR][1000 genomes]
rs66642068	0.86[AFR][1000 genomes]
rs66710673	0.82[AFR][1000 genomes]
rs66863985	0.86[AFR][1000 genomes]
rs67208365	0.82[AFR][1000 genomes]
rs68091393	0.82[AFR][1000 genomes]
rs7037239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73521196	1.00[AMR][1000 genomes]
rs73521201	1.00[AMR][1000 genomes]
rs73523253	1.00[AMR][1000 genomes]
rs73523261	1.00[AMR][1000 genomes]
rs73523275	1.00[AMR][1000 genomes]
rs73523277	1.00[AMR][1000 genomes]
rs73523285	1.00[AMR][1000 genomes]
rs73523301	1.00[AMR][1000 genomes]
rs73524810	1.00[AMR][1000 genomes]
rs73530354	1.00[AMR][1000 genomes]
rs73532323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532355	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73536042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73536067	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73536074	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73537487	1.00[AMR][1000 genomes]
rs73538140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73538152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73538177	0.86[AFR][1000 genomes]
rs73539427	1.00[AMR][1000 genomes]
rs73539428	1.00[AMR][1000 genomes]
rs73540059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73540077	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7858775	1.00[AMR][1000 genomes]
rs9409805	0.82[AFR][1000 genomes]
rs9696490	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97506200-97533400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr9:97509200-97536000	Weak transcription	Pancreas	Pancrea
3	chr9:97512600-97530400	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr9:97512600-97540800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr9:97512600-97544600	Weak transcription	Psoas Muscle	Psoas
6	chr9:97519800-97531200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:97519800-97544600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:97520400-97531800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr9:97520600-97529600	Weak transcription	NH-A	brain
10	chr9:97520600-97530600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr9:97520800-97531200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr9:97521800-97541200	Weak transcription	Right Ventricle	heart
13	chr9:97522400-97540400	Weak transcription	Fetal Heart	heart
14	chr9:97522800-97532600	Weak transcription	K562	blood
15	chr9:97522800-97534600	Weak transcription	Fetal Brain Male	brain
16	chr9:97522800-97534600	Weak transcription	NHLF	lung
17	chr9:97523000-97529000	Weak transcription	NHDF-Ad	bronchial
18	chr9:97523000-97530200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr9:97523000-97534600	Weak transcription	Ovary	ovary
20	chr9:97523200-97529800	Weak transcription	GM12878-XiMat	blood
21	chr9:97523200-97532600	Weak transcription	Brain Hippocampus Middle	brain
22	chr9:97523200-97535000	Weak transcription	Colon Smooth Muscle	Colon
23	chr9:97523400-97528600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr9:97523400-97529000	Weak transcription	Brain Angular Gyrus	brain
25	chr9:97523400-97529600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr9:97523400-97529600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr9:97523400-97529600	Weak transcription	Primary B cells from cord blood	blood
28	chr9:97523400-97529800	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr9:97523400-97530000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr9:97523400-97530400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr9:97523400-97530800	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr9:97523400-97530800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr9:97523400-97531200	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr9:97523400-97532000	Weak transcription	Adipose Nuclei	Adipose
35	chr9:97523400-97532000	Weak transcription	Duodenum Mucosa	Duodenum
36	chr9:97523400-97532000	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr9:97523400-97533000	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr9:97523400-97533400	Weak transcription	Brain Substantia Nigra	brain
39	chr9:97523400-97533600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr9:97523400-97534400	Weak transcription	Osteobl	bone
41	chr9:97523400-97534600	Weak transcription	Right Atrium	heart
42	chr9:97523400-97535600	Weak transcription	Aorta	Aorta
43	chr9:97523400-97535800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr9:97523400-97541400	Weak transcription	NHEK	skin
45	chr9:97523400-97544400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr9:97523400-97544400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr9:97523400-97545200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr9:97523400-97545200	Weak transcription	Liver	Liver
49	chr9:97523400-97545200	Weak transcription	Lung	lung
50	chr9:97523400-97545400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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