Variant report

Variant	rs73524810
Chromosome Location	chr9:97427279-97427280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs58676982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58889952	1.00[AMR][1000 genomes]
rs59596055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60553517	1.00[AMR][1000 genomes]
rs7037239	1.00[AMR][1000 genomes]
rs73521196	1.00[AMR][1000 genomes]
rs73521201	1.00[AMR][1000 genomes]
rs73523253	1.00[AMR][1000 genomes]
rs73523261	1.00[AMR][1000 genomes]
rs73523275	1.00[AMR][1000 genomes]
rs73523277	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73523285	1.00[AMR][1000 genomes]
rs73523301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73530354	1.00[AMR][1000 genomes]
rs73532323	1.00[AMR][1000 genomes]
rs73532332	1.00[AMR][1000 genomes]
rs73532340	1.00[AMR][1000 genomes]
rs73532355	1.00[AMR][1000 genomes]
rs73534109	1.00[AMR][1000 genomes]
rs73534113	1.00[AMR][1000 genomes]
rs73534154	1.00[AMR][1000 genomes]
rs73534159	1.00[AMR][1000 genomes]
rs73536042	1.00[AMR][1000 genomes]
rs73536067	1.00[AMR][1000 genomes]
rs73536074	1.00[AMR][1000 genomes]
rs73537487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73538140	1.00[AMR][1000 genomes]
rs73538152	1.00[AMR][1000 genomes]
rs73539427	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73539428	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7858775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9696490	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97420000-97427800	Weak transcription	HSMMtube	muscle
2	chr9:97424600-97431400	Enhancers	Fetal Intestine Large	intestine
3	chr9:97424600-97431400	Enhancers	Fetal Intestine Small	intestine
4	chr9:97425600-97428000	Enhancers	Liver	Liver
5	chr9:97426200-97427400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr9:97426600-97427600	Weak transcription	HepG2	liver
7	chr9:97426800-97428000	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr9:97426800-97428200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr9:97427200-97428000	Enhancers	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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