Variant report

Variant	rs58732488
Chromosome Location	chr5:147832270-147832271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10515614	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs15463	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17720107	0.83[EUR][1000 genomes]
rs1833767	0.83[EUR][1000 genomes]
rs3812011	0.83[EUR][1000 genomes]
rs4705255	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4705258	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58313354	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58502205	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59691479	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830516	chr5:147801104-147966093	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147797000-147832400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:147807600-147833600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:147807600-147833600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr5:147807600-147834000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:147808000-147835400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:147815600-147832400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:147817000-147834200	Weak transcription	Gastric	stomach
8	chr5:147822400-147833600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr5:147822400-147834000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr5:147822400-147839200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr5:147823000-147834400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:147823200-147833600	Weak transcription	Brain Germinal Matrix	brain
13	chr5:147823400-147834600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:147824200-147835000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:147826600-147834200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr5:147826800-147832600	Weak transcription	Right Atrium	heart
17	chr5:147826800-147833400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr5:147826800-147834200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr5:147828600-147832400	Weak transcription	Left Ventricle	heart
20	chr5:147831800-147837000	Enhancers	Fetal Heart	heart
21	chr5:147832200-147832800	Weak transcription	Right Ventricle	heart
22	chr5:147832200-147833000	Enhancers	Fetal Muscle Leg	muscle

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