Variant report

Variant	rs59691479
Chromosome Location	chr5:147796354-147796355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:147791122..147793369-chr5:147795063..147797333,2	MCF-7	breast:
2	chr5:147785040..147786997-chr5:147796101..147798521,2	MCF-7	breast:
3	chr5:147775768..147778946-chr5:147795419..147798483,3	K562	blood:
4	chr5:147786190..147787980-chr5:147795132..147796764,2	K562	blood:

Variant related genes	Relation type
ENSG00000145868	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10515614	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11957411	0.83[EUR][1000 genomes]
rs15463	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17720107	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1833767	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3812011	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4705254	0.83[EUR][1000 genomes]
rs4705255	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4705258	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58313354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58341123	0.92[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs58502205	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58732488	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60746551	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147764400-147796600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:147764400-147806800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:147768200-147805200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr5:147772600-147808000	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr5:147772600-147808800	Strong transcription	Dnd41	blood
6	chr5:147772800-147809400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:147773600-147808800	Strong transcription	Fetal Thymus	thymus
8	chr5:147774000-147809400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:147774200-147800400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:147774200-147809000	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr5:147774400-147807800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr5:147775400-147801600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr5:147777200-147808000	Strong transcription	Fetal Muscle Trunk	muscle
14	chr5:147777400-147823200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr5:147777600-147807600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr5:147777600-147809600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr5:147778000-147807600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr5:147778400-147808200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr5:147778400-147809400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr5:147778400-147823400	Strong transcription	Placenta	Placenta
21	chr5:147778600-147798600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr5:147778600-147809400	Strong transcription	Liver	Liver
23	chr5:147778800-147798400	Strong transcription	H1 Cell Line	embryonic stem cell
24	chr5:147778800-147800400	Strong transcription	Rectal Mucosa Donor 31	rectum
25	chr5:147778800-147803200	Weak transcription	Small Intestine	intestine
26	chr5:147778800-147808200	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr5:147778800-147809400	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr5:147778800-147822000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr5:147779000-147796600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr5:147779000-147808800	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr5:147779000-147809200	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr5:147779000-147814400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
33	chr5:147779200-147796600	Weak transcription	Stomach Mucosa	stomach
34	chr5:147779200-147808800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr5:147779800-147799400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr5:147780800-147808600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr5:147781200-147805200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr5:147781400-147798800	Strong transcription	NHDF-Ad	bronchial
39	chr5:147781800-147799600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr5:147781800-147809000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr5:147781800-147809000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr5:147781800-147809800	Strong transcription	Adipose Nuclei	Adipose
43	chr5:147781800-147823600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr5:147782600-147808400	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr5:147782600-147822800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr5:147783800-147808000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr5:147783800-147809600	Strong transcription	Primary B cells from cord blood	blood
48	chr5:147784200-147823600	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr5:147784400-147809000	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr5:147784400-147824600	Strong transcription	Monocytes-CD14+_RO01746	blood

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