Variant report

Variant	rs60746551
Chromosome Location	chr5:147776298-147776299
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:147776225-147776692	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr5:147775999-147776644	MCF10A-Er-Src	breast:	n/a	n/a
3	CEBPB	chr5:147776128-147776413	HepG2	liver:	n/a	n/a
4	CEBPB	chr5:147776164-147776373	HepG2	liver:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:147772901..147774477-chr5:147776015..147778379,3	K562	blood:
2	chr5:147768135..147770524-chr5:147775300..147778103,2	MCF-7	breast:
3	chr5:147762735..147765811-chr5:147775100..147779684,6	MCF-7	breast:
4	chr5:147762466..147766033-chr5:147774810..147779515,8	K562	blood:
5	chr5:147771234..147773372-chr5:147775172..147777361,2	MCF-7	breast:
6	chr5:147763628..147766033-chr5:147775829..147777852,2	K562	blood:
7	chr5:147768995..147770771-chr5:147775517..147777372,2	K562	blood:

No data

Variant related genes	Relation type
FBXO38	TF binding region
ENSG00000247199	Chromatin interaction
ENSG00000145868	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10515614	0.94[EUR][1000 genomes]
rs11957411	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs15463	0.83[EUR][1000 genomes]
rs17108157	0.81[AFR][1000 genomes]
rs17108171	0.83[AFR][1000 genomes]
rs17720107	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1833767	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3812011	0.90[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4705254	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4705255	0.92[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4705258	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs58313354	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs58341123	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58502205	0.83[EUR][1000 genomes]
rs59691479	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147764400-147777200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr5:147764400-147789800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:147764400-147795400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:147764400-147796600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:147764400-147806800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:147764800-147777400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:147765000-147784600	Weak transcription	Fetal Stomach	stomach
8	chr5:147765200-147777600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:147765200-147778400	Weak transcription	Fetal Kidney	kidney
10	chr5:147765200-147778600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr5:147765200-147796200	Weak transcription	Esophagus	oesophagus
12	chr5:147765600-147778600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr5:147765600-147784200	Weak transcription	Colonic Mucosa	Colon
14	chr5:147765800-147778600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr5:147765800-147789600	Weak transcription	Lung	lung
16	chr5:147766200-147778000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr5:147766200-147778600	Weak transcription	HSMMtube	muscle
18	chr5:147766200-147789600	Weak transcription	Spleen	Spleen
19	chr5:147766400-147780800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr5:147766600-147778400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr5:147767200-147778600	Weak transcription	NHLF	lung
22	chr5:147768200-147778400	Weak transcription	Brain Anterior Caudate	brain
23	chr5:147768200-147805200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr5:147768400-147789800	Weak transcription	Aorta	Aorta
25	chr5:147769200-147778600	Weak transcription	Fetal Muscle Leg	muscle
26	chr5:147772200-147776800	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr5:147772200-147780800	Strong transcription	Primary B cells from peripheral blood	blood
28	chr5:147772400-147776400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
29	chr5:147772600-147777200	Strong transcription	Primary B cells from cord blood	blood
30	chr5:147772600-147789600	Weak transcription	Gastric	stomach
31	chr5:147772600-147808000	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr5:147772600-147808800	Strong transcription	Dnd41	blood
33	chr5:147772800-147776400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr5:147772800-147777400	Weak transcription	Right Ventricle	heart
35	chr5:147772800-147788400	Weak transcription	Psoas Muscle	Psoas
36	chr5:147772800-147809400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr5:147773000-147779600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr5:147773000-147782400	Weak transcription	Right Atrium	heart
39	chr5:147773000-147784000	Weak transcription	Fetal Brain Male	brain
40	chr5:147773200-147777000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr5:147773200-147778000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr5:147773400-147777600	Weak transcription	Small Intestine	intestine
43	chr5:147773400-147778600	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr5:147773400-147789800	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr5:147773600-147776400	Weak transcription	Fetal Heart	heart
46	chr5:147773600-147777400	Weak transcription	Stomach Mucosa	stomach
47	chr5:147773600-147778400	Weak transcription	Brain Hippocampus Middle	brain
48	chr5:147773600-147786000	Strong transcription	Primary T cells from cord blood	blood
49	chr5:147773600-147808800	Strong transcription	Fetal Thymus	thymus
50	chr5:147773800-147776400	Strong transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links