Variant report

Variant	rs4705258
Chromosome Location	chr5:147826832-147826833
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:147763443..147765235-chr5:147826479..147828937,2	K562	blood:

Variant related genes	Relation type
ENSG00000145868	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10515614	0.93[CHB][hapmap];0.92[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11957411	0.83[EUR][1000 genomes]
rs15463	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17108157	0.95[YRI][hapmap]
rs17720107	0.85[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1833767	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1862429	0.95[YRI][hapmap]
rs3812011	0.85[CHB][hapmap];0.92[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4705254	0.83[EUR][1000 genomes]
rs4705255	0.93[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58313354	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58341123	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs58502205	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58732488	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59691479	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60746551	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830516	chr5:147801104-147966093	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147797000-147832400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:147807600-147833600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:147807600-147833600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr5:147807600-147834000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:147808000-147832000	Weak transcription	Right Ventricle	heart
6	chr5:147808000-147835400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr5:147815600-147832400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:147817000-147829600	Weak transcription	Pancreas	Pancrea
9	chr5:147817000-147834200	Weak transcription	Gastric	stomach
10	chr5:147818200-147830600	Weak transcription	Aorta	Aorta
11	chr5:147819400-147831600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr5:147821800-147827000	Weak transcription	Primary B cells from cord blood	blood
13	chr5:147821800-147827600	Weak transcription	HSMM	muscle
14	chr5:147821800-147830400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr5:147822000-147828000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr5:147822400-147828600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr5:147822400-147833600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr5:147822400-147834000	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr5:147822400-147839200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr5:147822800-147830800	Enhancers	Fetal Heart	heart
21	chr5:147823000-147827600	Enhancers	Fetal Intestine Large	intestine
22	chr5:147823000-147828000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr5:147823000-147834400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr5:147823200-147833600	Weak transcription	Brain Germinal Matrix	brain
25	chr5:147823400-147827000	Weak transcription	Adipose Nuclei	Adipose
26	chr5:147823400-147827400	Weak transcription	Fetal Muscle Trunk	muscle
27	chr5:147823400-147827600	Weak transcription	Primary B cells from peripheral blood	blood
28	chr5:147823400-147831000	Weak transcription	Primary T cells from cord blood	blood
29	chr5:147823400-147832200	Weak transcription	Fetal Muscle Leg	muscle
30	chr5:147823400-147834600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr5:147823600-147827000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr5:147824200-147835000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr5:147824400-147827800	Weak transcription	NHDF-Ad	bronchial
34	chr5:147824400-147828400	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr5:147824600-147827000	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr5:147824600-147827200	Weak transcription	Fetal Thymus	thymus
37	chr5:147824600-147828000	Weak transcription	Left Ventricle	heart
38	chr5:147825000-147827600	Enhancers	Fetal Intestine Small	intestine
39	chr5:147825600-147827600	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr5:147826000-147827200	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr5:147826600-147834200	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr5:147826800-147832600	Weak transcription	Right Atrium	heart
43	chr5:147826800-147833400	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr5:147826800-147834200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links