Variant report

Variant	rs1833767
Chromosome Location	chr5:147766897-147766898
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:147766680-147767277	HUVEC	blood vessel:	n/a	n/a
2	POLR2A	chr5:147766682-147767349	HUVEC	blood vessel:	n/a	n/a
3	POLR2A	chr5:147766824-147767314	HUVEC	blood vessel:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:147765249..147769728-chr5:147791100..147796136,4	K562	blood:
2	chr5:147766631..147770580-chr5:147772550..147777901,5	MCF-7	breast:
3	chr5:147764022..147766903-chr5:147772422..147774859,3	K562	blood:
4	chr5:147763737..147767286-chr5:147777906..147782200,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000247199	TF binding region
ENSG00000145868	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10515614	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11957411	0.94[EUR][1000 genomes]
rs15463	0.88[EUR][1000 genomes]
rs17108157	0.82[AFR][1000 genomes]
rs17108171	0.85[AFR][1000 genomes]
rs17720107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3812011	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4705254	0.94[EUR][1000 genomes]
rs4705255	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4705258	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs58313354	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58341123	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58502205	0.88[EUR][1000 genomes]
rs58732488	0.83[EUR][1000 genomes]
rs59691479	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60746551	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147764400-147767400	Weak transcription	Placenta	Placenta
2	chr5:147764400-147768000	Weak transcription	Aorta	Aorta
3	chr5:147764400-147773000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:147764400-147777200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr5:147764400-147789800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:147764400-147795400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:147764400-147796600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr5:147764400-147806800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:147764600-147767000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr5:147764600-147768000	Enhancers	HUVEC	blood vessel
11	chr5:147764600-147768600	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr5:147764600-147770600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr5:147764600-147772200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr5:147764600-147772400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:147764600-147773800	Weak transcription	HSMM	muscle
16	chr5:147764600-147774400	Weak transcription	HMEC	breast
17	chr5:147764800-147767000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr5:147764800-147768200	Enhancers	NH-A	brain
19	chr5:147764800-147768800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr5:147764800-147771800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr5:147764800-147772600	Weak transcription	Fetal Brain Female	brain
22	chr5:147764800-147777400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr5:147765000-147767200	Enhancers	NHLF	lung
24	chr5:147765000-147768000	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr5:147765000-147768800	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr5:147765000-147770600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr5:147765000-147784600	Weak transcription	Fetal Stomach	stomach
28	chr5:147765200-147767000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr5:147765200-147767400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr5:147765200-147767400	Enhancers	Muscle Satellite Cultured Cells	--
31	chr5:147765200-147767600	Weak transcription	Fetal Thymus	thymus
32	chr5:147765200-147770400	Weak transcription	Brain Hippocampus Middle	brain
33	chr5:147765200-147771800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr5:147765200-147771800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr5:147765200-147774200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr5:147765200-147774400	Weak transcription	Fetal Lung	lung
37	chr5:147765200-147777600	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr5:147765200-147778400	Weak transcription	Fetal Kidney	kidney
39	chr5:147765200-147778600	Weak transcription	Stomach Smooth Muscle	stomach
40	chr5:147765200-147796200	Weak transcription	Esophagus	oesophagus
41	chr5:147765400-147767200	Enhancers	Primary neutrophils fromperipheralblood	blood
42	chr5:147765600-147767000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr5:147765600-147768600	Genic enhancers	Primary T cells from cord blood	blood
44	chr5:147765600-147778600	Weak transcription	Rectal Smooth Muscle	rectum
45	chr5:147765600-147784200	Weak transcription	Colonic Mucosa	Colon
46	chr5:147765800-147767600	Weak transcription	Colon Smooth Muscle	Colon
47	chr5:147765800-147767600	Weak transcription	Fetal Intestine Large	intestine
48	chr5:147765800-147767600	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr5:147765800-147767800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr5:147765800-147767800	Weak transcription	Brain Anterior Caudate	brain

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