Variant report

Variant	rs58502205
Chromosome Location	chr5:147814777-147814778
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10515614	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11957411	0.83[EUR][1000 genomes]
rs15463	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17720107	0.88[EUR][1000 genomes]
rs1833767	0.88[EUR][1000 genomes]
rs3812011	0.88[EUR][1000 genomes]
rs4705254	0.83[EUR][1000 genomes]
rs4705255	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4705258	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58313354	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58341123	0.83[EUR][1000 genomes]
rs58732488	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59691479	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60746551	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830516	chr5:147801104-147966093	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147777400-147823200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr5:147778400-147823400	Strong transcription	Placenta	Placenta
3	chr5:147778800-147822000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:147781800-147823600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr5:147782600-147822800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr5:147784200-147823600	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr5:147784400-147824600	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr5:147797000-147832400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:147797600-147826400	Weak transcription	Stomach Mucosa	stomach
10	chr5:147801200-147823600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:147801800-147817800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr5:147804400-147822200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr5:147807000-147816400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr5:147807400-147814800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr5:147807400-147818600	Weak transcription	Psoas Muscle	Psoas
16	chr5:147807400-147819800	Weak transcription	Small Intestine	intestine
17	chr5:147807400-147826600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:147807600-147815000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr5:147807600-147816600	Weak transcription	Aorta	Aorta
20	chr5:147807600-147816600	Weak transcription	Esophagus	oesophagus
21	chr5:147807600-147816600	Weak transcription	Pancreas	Pancrea
22	chr5:147807600-147819800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr5:147807600-147823800	Weak transcription	Brain Angular Gyrus	brain
24	chr5:147807600-147824400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr5:147807600-147833600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr5:147807600-147833600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr5:147807600-147834000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr5:147807800-147818600	Weak transcription	Colon Smooth Muscle	Colon
29	chr5:147808000-147814800	Weak transcription	Ovary	ovary
30	chr5:147808000-147816400	Weak transcription	Gastric	stomach
31	chr5:147808000-147817800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr5:147808000-147817800	Weak transcription	Lung	lung
33	chr5:147808000-147818200	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr5:147808000-147832000	Weak transcription	Right Ventricle	heart
35	chr5:147808000-147835400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr5:147808200-147822200	Weak transcription	Colonic Mucosa	Colon
37	chr5:147809200-147819800	Weak transcription	HMEC	breast
38	chr5:147809200-147820600	Weak transcription	Rectal Smooth Muscle	rectum
39	chr5:147810200-147818400	Strong transcription	Adipose Nuclei	Adipose
40	chr5:147810200-147822800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr5:147810200-147823000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr5:147810200-147823600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr5:147810200-147824400	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr5:147810400-147823200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr5:147810400-147823400	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr5:147810400-147823600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr5:147810600-147815600	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr5:147810600-147816400	Strong transcription	Primary T cells from cord blood	blood
49	chr5:147810600-147821800	Strong transcription	GM12878-XiMat	blood
50	chr5:147810600-147822400	Strong transcription	Fetal Intestine Large	intestine

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