Variant report

Variant	rs58890880
Chromosome Location	chr14:72467516-72467517
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1009017	0.93[ASN][1000 genomes]
rs11158920	0.82[EUR][1000 genomes]
rs11158927	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11620690	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11622507	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11623492	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11623535	0.86[ASN][1000 genomes]
rs11625937	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11627768	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11628133	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11628574	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12148043	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17093750	0.82[EUR][1000 genomes]
rs17104493	0.81[EUR][1000 genomes]
rs17105346	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17105566	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17105606	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1987722	0.92[ASN][1000 genomes]
rs1987723	0.91[ASN][1000 genomes]
rs2010846	0.92[ASN][1000 genomes]
rs2010850	0.92[ASN][1000 genomes]
rs2052015	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2238277	0.84[EUR][1000 genomes]
rs2332705	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3784055	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3784056	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4243640	0.92[ASN][1000 genomes]
rs4350510	0.90[ASN][1000 genomes]
rs4354860	0.92[ASN][1000 genomes]
rs4899409	0.83[EUR][1000 genomes]
rs4902958	0.83[EUR][1000 genomes]
rs4902966	0.92[ASN][1000 genomes]
rs56743778	0.82[EUR][1000 genomes]
rs59631889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60503142	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs699358	0.92[ASN][1000 genomes]
rs72734102	0.82[EUR][1000 genomes]
rs72735921	0.82[EUR][1000 genomes]
rs72735923	0.82[EUR][1000 genomes]
rs72735952	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72735955	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72735956	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7494103	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8013467	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72467000-72468000	Enhancers	Fetal Muscle Leg	muscle
2	chr14:72467000-72471000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr14:72467200-72468000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr14:72467200-72468000	Enhancers	Ovary	ovary
5	chr14:72467400-72467600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr14:72467400-72467600	Flanking Active TSS	GM12878-XiMat	blood
7	chr14:72467400-72467800	Weak transcription	Left Ventricle	heart

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