Variant report

Variant	rs2052015
Chromosome Location	chr14:72487053-72487054
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72485047..72487639-chr14:72493810..72496038,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1009017	0.89[JPT][hapmap]
rs11158920	0.84[JPT][hapmap]
rs11158926	0.83[JPT][hapmap]
rs11158927	0.89[JPT][hapmap];0.86[EUR][1000 genomes]
rs11620690	0.89[JPT][hapmap];0.86[EUR][1000 genomes]
rs11622507	0.82[EUR][1000 genomes]
rs11623492	0.89[JPT][hapmap];0.86[EUR][1000 genomes]
rs11623535	0.89[JPT][hapmap]
rs11625937	0.89[JPT][hapmap];0.86[EUR][1000 genomes]
rs11627768	0.87[JPT][hapmap];0.82[EUR][1000 genomes]
rs11628133	0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11628574	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12148043	0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12433721	0.84[JPT][hapmap]
rs1476745	0.83[JPT][hapmap]
rs17105346	0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs17105566	0.84[JPT][hapmap];0.86[EUR][1000 genomes]
rs17105606	0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17105690	0.94[JPT][hapmap]
rs17768361	0.82[JPT][hapmap]
rs2332705	0.81[EUR][1000 genomes]
rs3784055	0.83[JPT][hapmap];0.80[EUR][1000 genomes]
rs3784056	0.83[JPT][hapmap];0.80[EUR][1000 genomes]
rs3784058	0.84[JPT][hapmap]
rs4243640	0.89[JPT][hapmap]
rs4350510	0.89[JPT][hapmap]
rs4354860	0.89[JPT][hapmap]
rs4899412	0.89[JPT][hapmap]
rs4902958	0.84[JPT][hapmap]
rs4902966	0.89[JPT][hapmap]
rs58890880	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59631889	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60503142	0.82[EUR][1000 genomes]
rs72735952	0.82[EUR][1000 genomes]
rs72735955	0.86[EUR][1000 genomes]
rs72735956	0.86[EUR][1000 genomes]
rs7494103	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8003026	0.80[YRI][hapmap]
rs8013467	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1053520	chr14:72485195-72537202	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72481000-72489200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:72482400-72489400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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