Variant report

Variant	rs58906653
Chromosome Location	chr1:185649357-185649358
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:185647865..185651448-chr1:185655327..185657400,3	MCF-7	breast:
2	chr1:185643975..185646713-chr1:185648443..185650293,2	K562	blood:
3	chr1:185636831..185638870-chr1:185648065..185649959,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs60191267	1.00[EUR][1000 genomes]
rs60220243	1.00[EUR][1000 genomes]
rs61096154	1.00[EUR][1000 genomes]
rs61605296	1.00[EUR][1000 genomes]
rs6695485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73061137	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73061138	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73061142	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73068987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73070909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73070910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74133204	1.00[EUR][1000 genomes]
rs7556038	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185643200-185649400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr1:185644000-185649600	Weak transcription	Fetal Heart	heart
3	chr1:185644800-185649400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr1:185647000-185649400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr1:185647400-185649400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr1:185647400-185649400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr1:185648200-185649600	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr1:185648200-185649800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:185648200-185650200	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr1:185648200-185650600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr1:185648400-185649600	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr1:185648400-185649600	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr1:185648400-185649600	Enhancers	Right Atrium	heart
14	chr1:185648400-185650000	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr1:185648400-185650000	Enhancers	Spleen	Spleen
16	chr1:185648400-185650200	Enhancers	Primary T cells from cord blood	blood
17	chr1:185648600-185650000	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr1:185648600-185650000	Enhancers	Left Ventricle	heart
19	chr1:185648600-185650000	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr1:185648600-185650200	Enhancers	Fetal Thymus	thymus
21	chr1:185648600-185650200	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr1:185648800-185649800	Weak transcription	HUVEC	blood vessel
23	chr1:185648800-185650000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr1:185648800-185650000	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr1:185648800-185650200	Enhancers	Primary B cells from cord blood	blood
26	chr1:185648800-185650200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr1:185649000-185650000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr1:185649000-185650000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr1:185649000-185650000	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr1:185649000-185650000	Enhancers	Rectal Mucosa Donor 29	rectum
31	chr1:185649200-185649600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr1:185649200-185649600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr1:185649200-185649800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr1:185649200-185650000	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr1:185649200-185650000	Enhancers	Primary T cells fromperipheralblood	blood
36	chr1:185649200-185650000	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr1:185649200-185650000	Enhancers	Adipose Nuclei	Adipose
38	chr1:185649200-185650000	Enhancers	Placenta Amnion	Placenta Amnion
39	chr1:185649200-185650200	Enhancers	Primary B cells from peripheral blood	blood
40	chr1:185649200-185650200	Enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr1:185649200-185650200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
42	chr1:185649200-185650200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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