Variant report

Variant	rs61096154
Chromosome Location	chr1:185578265-185578266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11581960	0.90[AFR][1000 genomes]
rs35495151	0.81[AFR][1000 genomes]
rs58906653	1.00[EUR][1000 genomes]
rs60191267	1.00[EUR][1000 genomes]
rs60220243	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61605296	1.00[EUR][1000 genomes]
rs6695485	1.00[EUR][1000 genomes]
rs73061137	1.00[EUR][1000 genomes]
rs73061138	1.00[EUR][1000 genomes]
rs73061142	1.00[EUR][1000 genomes]
rs73068987	1.00[EUR][1000 genomes]
rs73070909	1.00[EUR][1000 genomes]
rs73070910	1.00[EUR][1000 genomes]
rs74133204	1.00[EUR][1000 genomes]
rs7556038	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185576000-185579400	Enhancers	Primary B cells from peripheral blood	blood
2	chr1:185578200-185578400	Enhancers	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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