Variant report

Variant	rs73061142
Chromosome Location	chr1:185632307-185632308
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs58906653	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60191267	1.00[EUR][1000 genomes]
rs60220243	1.00[EUR][1000 genomes]
rs61096154	1.00[EUR][1000 genomes]
rs61605296	1.00[EUR][1000 genomes]
rs6695485	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73061137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73061138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73068987	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73070909	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73070910	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74133204	1.00[EUR][1000 genomes]
rs7556038	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185618800-185638800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:185626200-185632400	Weak transcription	Placenta	Placenta
3	chr1:185628000-185632400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:185630800-185632800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr1:185630800-185632800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr1:185630800-185632800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr1:185631000-185632800	Enhancers	H9 Cell Line	embryonic stem cell
8	chr1:185631600-185632400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:185631600-185632800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:185631800-185632800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr1:185631800-185635200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr1:185631800-185635400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr1:185632200-185632600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr1:185632200-185632800	Enhancers	Fetal Intestine Small	intestine
15	chr1:185632200-185632800	Enhancers	HepG2	liver
16	chr1:185632200-185633200	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr1:185632200-185635600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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