Variant report

Variant	rs7556038
Chromosome Location	chr1:185562315-185562316
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs58906653	1.00[EUR][1000 genomes]
rs60191267	1.00[EUR][1000 genomes]
rs60220243	1.00[EUR][1000 genomes]
rs61096154	1.00[EUR][1000 genomes]
rs61605296	1.00[EUR][1000 genomes]
rs6695485	1.00[EUR][1000 genomes]
rs73061137	1.00[EUR][1000 genomes]
rs73061138	1.00[EUR][1000 genomes]
rs73061142	1.00[EUR][1000 genomes]
rs73068987	1.00[EUR][1000 genomes]
rs73070909	1.00[EUR][1000 genomes]
rs73070910	1.00[EUR][1000 genomes]
rs74133204	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185556000-185563200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:185561800-185562400	Enhancers	NHEK	skin
3	chr1:185561800-185565200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr1:185562000-185562400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:185562000-185562800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:185562000-185563000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr1:185562000-185563400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:185562000-185563600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr1:185562000-185564200	Enhancers	Placenta Amnion	Placenta Amnion
10	chr1:185562000-185564400	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr1:185562200-185562800	Weak transcription	Fetal Intestine Small	intestine
12	chr1:185562200-185563200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr1:185562200-185563600	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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