Variant report

Variant	rs60220243
Chromosome Location	chr1:185526861-185526862
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11581960	0.85[AFR][1000 genomes]
rs35495151	0.86[AFR][1000 genomes]
rs58906653	1.00[EUR][1000 genomes]
rs60191267	1.00[EUR][1000 genomes]
rs61096154	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61605296	1.00[EUR][1000 genomes]
rs6695485	1.00[EUR][1000 genomes]
rs73061137	1.00[EUR][1000 genomes]
rs73061138	1.00[EUR][1000 genomes]
rs73061142	1.00[EUR][1000 genomes]
rs73068987	1.00[EUR][1000 genomes]
rs73070909	1.00[EUR][1000 genomes]
rs73070910	1.00[EUR][1000 genomes]
rs74133204	1.00[EUR][1000 genomes]
rs7556038	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185520800-185528800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:185521000-185533800	Weak transcription	Placenta	Placenta
3	chr1:185524800-185529000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr1:185525000-185528600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr1:185525400-185536000	Weak transcription	Stomach Mucosa	stomach
6	chr1:185526000-185527600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr1:185526000-185528600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:185526400-185533800	Weak transcription	Osteobl	bone
9	chr1:185526600-185528800	Weak transcription	Fetal Intestine Small	intestine
10	chr1:185526600-185530600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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