Variant report

Variant	rs58961766
Chromosome Location	chr12:21425958-21425959
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs11045839	1.00[AMR][1000 genomes]
rs11045840	1.00[AMR][1000 genomes]
rs11045841	1.00[AMR][1000 genomes]
rs11045844	1.00[AMR][1000 genomes]
rs11045845	1.00[AMR][1000 genomes]
rs11045846	1.00[AMR][1000 genomes]
rs11045847	1.00[AMR][1000 genomes]
rs11045848	1.00[AMR][1000 genomes]
rs11045849	1.00[AMR][1000 genomes]
rs11045852	1.00[AMR][1000 genomes]
rs11045854	1.00[AMR][1000 genomes]
rs11045855	1.00[AMR][1000 genomes]
rs11045857	1.00[AMR][1000 genomes]
rs12296695	1.00[AMR][1000 genomes]
rs12297423	1.00[AMR][1000 genomes]
rs12301796	1.00[AMR][1000 genomes]
rs12302130	1.00[AMR][1000 genomes]
rs12302293	1.00[AMR][1000 genomes]
rs12303713	1.00[AMR][1000 genomes]
rs12305852	1.00[AMR][1000 genomes]
rs12306105	1.00[AMR][1000 genomes]
rs12307624	1.00[AMR][1000 genomes]
rs12310216	1.00[AMR][1000 genomes]
rs12310977	1.00[AMR][1000 genomes]
rs12312746	1.00[AMR][1000 genomes]
rs12313499	1.00[AMR][1000 genomes]
rs12314902	1.00[AMR][1000 genomes]
rs12315464	1.00[AMR][1000 genomes]
rs12315627	1.00[AMR][1000 genomes]
rs12318652	1.00[AMR][1000 genomes]
rs2199765	1.00[AMR][1000 genomes]
rs28588986	1.00[AMR][1000 genomes]
rs28673691	1.00[AMR][1000 genomes]
rs28782899	1.00[AMR][1000 genomes]
rs28854565	1.00[AMR][1000 genomes]
rs3919879	1.00[AMR][1000 genomes]
rs55924330	1.00[AMR][1000 genomes]
rs55941487	1.00[AMR][1000 genomes]
rs56388154	1.00[AMR][1000 genomes]
rs56397921	1.00[AMR][1000 genomes]
rs57067716	1.00[AMR][1000 genomes]
rs57702815	1.00[AMR][1000 genomes]
rs57986280	1.00[AMR][1000 genomes]
rs58103058	1.00[AMR][1000 genomes]
rs58173663	1.00[AMR][1000 genomes]
rs58265175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58686364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59085891	1.00[AMR][1000 genomes]
rs59194406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59459177	1.00[AMR][1000 genomes]
rs60196542	1.00[AMR][1000 genomes]
rs61264547	1.00[AMR][1000 genomes]
rs61560728	1.00[AMR][1000 genomes]
rs61564937	1.00[AMR][1000 genomes]
rs61673259	1.00[AFR][1000 genomes]
rs6487211	1.00[AMR][1000 genomes]
rs7301251	1.00[AMR][1000 genomes]
rs74064185	1.00[AMR][1000 genomes]
rs74064186	1.00[AMR][1000 genomes]
rs74064193	1.00[AMR][1000 genomes]
rs74064195	1.00[AMR][1000 genomes]
rs74064196	1.00[AMR][1000 genomes]
rs74064211	1.00[AMR][1000 genomes]
rs74064213	1.00[AMR][1000 genomes]
rs74064215	1.00[AMR][1000 genomes]
rs74064260	1.00[AMR][1000 genomes]
rs74064264	1.00[AMR][1000 genomes]
rs74064273	1.00[AMR][1000 genomes]
rs74066310	1.00[AMR][1000 genomes]
rs74066311	1.00[AMR][1000 genomes]
rs74066323	1.00[AMR][1000 genomes]
rs74066324	1.00[AMR][1000 genomes]
rs74068928	1.00[AMR][1000 genomes]
rs7486079	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898883	chr12:21294293-21450917	Enhancers Active TSS Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv898886	chr12:21354494-21450250	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv898888	chr12:21355537-21426087	Strong transcription Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv898889	chr12:21421343-21426087	Strong transcription Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	nsv898890	chr12:21421343-21441918	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	n/a	n/a	inside rSNPs	diseases
6	nsv898891	chr12:21422253-21453355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3359083	chr12:21423635-21426783	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21411000-21460400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr12:21416200-21449600	Weak transcription	Brain Hippocampus Middle	brain
3	chr12:21416200-21473600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr12:21417000-21429800	Weak transcription	Brain Substantia Nigra	brain
5	chr12:21422600-21447200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr12:21425800-21426600	Strong transcription	Liver	Liver
7	chr12:21425800-21426600	Strong transcription	Brain Anterior Caudate	brain

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