Variant report

Variant	rs59194406
Chromosome Location	chr12:21458830-21458831
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs11045839	1.00[AMR][1000 genomes]
rs11045840	1.00[AMR][1000 genomes]
rs11045841	1.00[AMR][1000 genomes]
rs11045844	1.00[AMR][1000 genomes]
rs11045845	1.00[AMR][1000 genomes]
rs11045846	1.00[AMR][1000 genomes]
rs11045847	1.00[AMR][1000 genomes]
rs11045848	1.00[AMR][1000 genomes]
rs11045849	1.00[AMR][1000 genomes]
rs11045852	1.00[AMR][1000 genomes]
rs11045854	1.00[AMR][1000 genomes]
rs11045855	1.00[AMR][1000 genomes]
rs11045857	1.00[AMR][1000 genomes]
rs12296695	1.00[AMR][1000 genomes]
rs12297423	1.00[AMR][1000 genomes]
rs12301796	1.00[AMR][1000 genomes]
rs12302130	1.00[AMR][1000 genomes]
rs12302293	1.00[AMR][1000 genomes]
rs12303713	1.00[AMR][1000 genomes]
rs12305852	1.00[AMR][1000 genomes]
rs12306105	1.00[AMR][1000 genomes]
rs12307624	1.00[AMR][1000 genomes]
rs12310216	1.00[AMR][1000 genomes]
rs12310977	1.00[AMR][1000 genomes]
rs12312746	1.00[AMR][1000 genomes]
rs12313499	1.00[AMR][1000 genomes]
rs12314902	1.00[AMR][1000 genomes]
rs12315464	1.00[AMR][1000 genomes]
rs12315627	1.00[AMR][1000 genomes]
rs12318652	1.00[AMR][1000 genomes]
rs2199765	1.00[AMR][1000 genomes]
rs28588986	1.00[AMR][1000 genomes]
rs28673691	1.00[AMR][1000 genomes]
rs28782899	1.00[AMR][1000 genomes]
rs28854565	1.00[AMR][1000 genomes]
rs3919879	1.00[AMR][1000 genomes]
rs55924330	1.00[AMR][1000 genomes]
rs55941487	1.00[AMR][1000 genomes]
rs56388154	1.00[AMR][1000 genomes]
rs56397921	1.00[AMR][1000 genomes]
rs57067716	1.00[AMR][1000 genomes]
rs57702815	1.00[AMR][1000 genomes]
rs57986280	1.00[AMR][1000 genomes]
rs58103058	1.00[AMR][1000 genomes]
rs58173663	1.00[AMR][1000 genomes]
rs58265175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58686364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58961766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59085891	1.00[AMR][1000 genomes]
rs59459177	1.00[AMR][1000 genomes]
rs60196542	1.00[AMR][1000 genomes]
rs61264547	1.00[AMR][1000 genomes]
rs61560728	1.00[AMR][1000 genomes]
rs61564937	1.00[AMR][1000 genomes]
rs61673259	1.00[AFR][1000 genomes]
rs6487211	1.00[AMR][1000 genomes]
rs7301251	1.00[AMR][1000 genomes]
rs74064185	1.00[AMR][1000 genomes]
rs74064186	1.00[AMR][1000 genomes]
rs74064193	1.00[AMR][1000 genomes]
rs74064195	1.00[AMR][1000 genomes]
rs74064196	1.00[AMR][1000 genomes]
rs74064211	1.00[AMR][1000 genomes]
rs74064213	1.00[AMR][1000 genomes]
rs74064215	1.00[AMR][1000 genomes]
rs74064260	1.00[AMR][1000 genomes]
rs74064264	1.00[AMR][1000 genomes]
rs74064273	1.00[AMR][1000 genomes]
rs74066310	1.00[AMR][1000 genomes]
rs74066311	1.00[AMR][1000 genomes]
rs74066323	1.00[AMR][1000 genomes]
rs74066324	1.00[AMR][1000 genomes]
rs74068928	1.00[AMR][1000 genomes]
rs7486079	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557735	chr12:21443282-21538957	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21411000-21460400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr12:21416200-21473600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr12:21426600-21460400	Weak transcription	Brain Anterior Caudate	brain
4	chr12:21447600-21460600	Weak transcription	Brain Substantia Nigra	brain
5	chr12:21450800-21460600	Weak transcription	Brain Hippocampus Middle	brain
6	chr12:21451400-21460600	Weak transcription	Brain Angular Gyrus	brain
7	chr12:21458200-21459400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr12:21458800-21459200	Enhancers	NHDF-Ad	bronchial

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